PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00147g00136.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 354aa    MW: 40212.7 Da    PI: 5.0919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00147g00136.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Peaxi162Scf00147g00136.1 14 RGRWTAEEDEILTKYIHANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                              8*******************************99************97 PP
2Myb_DNA-binding51.72e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+ T+eE+ +++++ + lG++ W++Ia++++ gRt++++k++w+++l
  Peaxi162Scf00147g00136.1  67 RGNITPEEEAIIIKLRATLGNR-WSLIAEHLP-GRTDNEIKNYWNSHL 112
                               7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.126961IPR017930Myb domain
SuperFamilySSF466898.07E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211568IPR009057Homeodomain-like
CDDcd001671.78E-81661No hitNo description
PROSITE profilePS5129424.70962116IPR017930Myb domain
SMARTSM007175.6E-1766114IPR001005SANT/Myb domain
PfamPF002495.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2569116IPR009057Homeodomain-like
CDDcd001674.86E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILTKYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKTDLKRGNI TPEEEAIIIK LRATLGNRWS LIAEHLPGRT DNEIKNYWNS HLSRKVESLR  120
IPSDERLPKA VVELAKKGTQ QLNKQRRGRV SRSAMQKNRN NLSSTKGTST ASTLSKPQQP  180
PKEINTISMP STPNIIEKEV LSSTTTSSGQ DASNTHLTSD NYASELDNEM LWHEELDPDF  240
IFTCLWNEEG ENLETVENNN SHNSNTEILS VNVDMVSPGN SKINETSTLM EDGTSLDWDW  300
QYLSEWNEIW AEQEENMSNN NISSRQLSNE ALVEIDPVQQ VDYNHSELVA WLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22121185110B-MYB
1h8a_C6e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-44HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-44HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621617.11e-135PREDICTED: transcription factor MYB12-like
TrEMBLA0A1S4B1511e-129A0A1S4B151_TOBAC; transcription repressor MYB6-like
STRINGXP_009621617.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-75myb domain protein 12