PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00141g00619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 201aa MW: 22312.6 Da PI: 8.3074 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 43.7 | 4.4e-14 | 21 | 75 | 128 | 181 |
GRAS 128 LlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl 181 Llq LasRp+g+p +RiTgvg++ ++ + l+ +g+ La++ +++gvpfef+ Peaxi162Scf00141g00619.1 21 LLQDLASRPGGTPFVRITGVGPQPAHaQDGGLQLVGQSLAEVSKSCGVPFEFHGA 75 9********************977778999***********************84 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.868 | 1 | 201 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-11 | 21 | 75 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MRTGSTSLIF RLHRKSVDVF LLQDLASRPG GTPFVRITGV GPQPAHAQDG GLQLVGQSLA 60 EVSKSCGVPF EFHGATLSGC EFVPEDYDHS RTRIARQHLP RFHATRPRDD KQGISAEEHC 120 VARYVVDIIA CEGADKVKRE VRPSRTLEGI QPKLHVCRVK VRCFLDGKIE LQQHLLLGDD 180 ICWQLLSKIK VLPNDLDVAS S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773976.1 | 3e-37 | PREDICTED: scarecrow-like protein 13 | ||||
Refseq | XP_016483598.1 | 3e-37 | PREDICTED: scarecrow-like protein 13 | ||||
TrEMBL | A0A1S4B490 | 6e-36 | A0A1S4B490_TOBAC; scarecrow-like protein 13 | ||||
TrEMBL | A0A1U7W9T5 | 6e-36 | A0A1U7W9T5_NICSY; scarecrow-like protein 13 | ||||
STRING | XP_009773976.1 | 1e-36 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50600.1 | 2e-21 | scarecrow-like 5 |