PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00139g00134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | NF-YB | ||||||||
Protein Properties | Length: 226aa MW: 25429.2 Da PI: 6.7889 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 135.2 | 2e-42 | 35 | 130 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 reqd +lPianv+rim+++lP++ak+s+dake vqe vs+fi +t a+++c++e+r+t++++d +wa+ ++G+ +yvepl++y Peaxi162Scf00139g00134.1 35 REQDLYLPIANVTRIMRRILPQHAKVSDDAKEAVQELVSQFINHITIIANERCHKEQRRTVTAEDCIWAMNKIGLTNYVEPLTLY 119 89*********************************************************************************** PP NF-YB 87 lkkyrelegek 97 l++yre e+++ Peaxi162Scf00139g00134.1 120 LQRYREQESDR 130 ********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-43 | 31 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.26E-33 | 37 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-20 | 40 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.2E-9 | 68 | 86 | No hit | No description |
PRINTS | PR00615 | 6.2E-9 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 6.2E-9 | 106 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDCGHISNQQ RRNASSNYGS NNNGSGTLPN QQARREQDLY LPIANVTRIM RRILPQHAKV 60 SDDAKEAVQE LVSQFINHIT IIANERCHKE QRRTVTAEDC IWAMNKIGLT NYVEPLTLYL 120 QRYREQESDR SSGQRRPVHM SPNVELGLAP PTGSVQAFPL NYAPAQGYPY PQFHSFYDPA 180 VMMNGFNMNY GNEGMAENDE PAESSSSTGT NYGLPGVNDP FGQFRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-42 | 35 | 125 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018622700.1 | 1e-104 | PREDICTED: nuclear transcription factor Y subunit B-2-like | ||||
TrEMBL | A0A1U7WXA5 | 3e-96 | A0A1U7WXA5_NICSY; nuclear transcription factor Y subunit B-6-like | ||||
STRING | XP_009784547.1 | 5e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16246 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-46 | nuclear factor Y, subunit B6 |