PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00135g01433.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 303aa    MW: 34168.4 Da    PI: 7.6699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00135g01433.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20108157255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++ a+++++g
  Peaxi162Scf00135g01433.1 108 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDDAALRFKG 157
                               7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32107166IPR001471AP2/ERF domain
PfamPF008471.3E-13108157IPR001471AP2/ERF domain
CDDcd000188.81E-21108166No hitNo description
SMARTSM003805.4E-38108171IPR001471AP2/ERF domain
PROSITE profilePS5103224.961108165IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22108166IPR016177DNA-binding domain
PRINTSPR003671.6E-11109120IPR001471AP2/ERF domain
PRINTSPR003671.6E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
TIQVILAILA DQIRHGKRPF SSDDINDEEA NNIIFPIYSA RSQHDMSAMV SVLSQVIGNT  60
ATTNTNTNSS VNSSLHGNPL TTLPHQFAAT RQNQSQPIQE QGKEKRRHYR GVRQRPWGKW  120
AAEIRDPKKA ARVWLGTFDT AEAAALAYDD AALRFKGNKA KLNFPERVQA KTTGFEYFTS  180
THHQFNNNNN VVSSFQPALS HQDQHFPNVH HYAQLLRSRS SNNIDMNFGV SPSVNYHQSG  240
AFVSPNTSLA LQHQGSSHHE QHQPISYHTQ EEEYLRFPFH FGNSSSTTGP PPGESNWEDF  300
EYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-27107168163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-27105170268ATERF1
3gcc_A8e-27105170268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-48HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264409.11e-101PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH546e-55EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A314L4G11e-99A0A314L4G1_NICAT; Ethylene-responsive transcription factor erf115
STRINGXP_009586804.11e-101(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]