PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00134g02029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | NF-YC | ||||||||
Protein Properties | Length: 291aa MW: 32192.7 Da PI: 6.0843 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.3 | 3.1e-55 | 80 | 183 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa Peaxi162Scf00134g02029.1 80 QLQTFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAA 164 89******99999************************************************************************ PP NF-YC 83 vtrtdifdflvdivprdel 101 +trtdifdflvdivpr++l Peaxi162Scf00134g02029.1 165 ITRTDIFDFLVDIVPREDL 183 ****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.47E-33 | 69 | 174 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-22 | 102 | 165 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.4E-38 | 103 | 180 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MDHHGNGQPP GIGVVTSSAP QYGAPYLANQ MAGASPPAVS AGGIQSPQAA SLSASSAQMA 60 QHQLAYQHIH QQQQQQLQQQ LQTFWANQYQ EIEHVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EDLKDEVLAS IPRGTLPVGG PTEGLPFYYT VPPQSAPPVG APGMYMGKPV DQALYAQQPR 240 FKESTEVEFL LFRLGGGFQS SCFLEYGQGF CLSIPCVLLF KFLLLFEGLS W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-60 | 88 | 180 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ767664 | 0.0 | KJ767664.1 Nicotiana tabacum CONSTANS interacting protein 2b (CIP2b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312630.1 | 1e-159 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_009590081.1 | 1e-159 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_009590082.1 | 1e-159 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_009590083.1 | 1e-159 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_016480552.1 | 1e-159 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_016480553.1 | 1e-159 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 1e-79 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A076FU26 | 1e-157 | A0A076FU26_TOBAC; CONSTANS interacting protein 2b | ||||
STRING | XP_009590081.1 | 1e-158 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-79 | nuclear factor Y, subunit C9 |