PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00132g01412.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 273aa MW: 31168.6 Da PI: 5.9956

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00132g01412.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ed++l+d++ ++G g+W++++ g+ R +k+c++rw +yl Peaxi162Scf00132g01412.1 15 RGLWSPDEDQKLKDYILRHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62 788*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-22	9	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.854	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	5.99E-20	13	98	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-11	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.53E-9	18	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-9	66	106	IPR009057	Homeodomain-like
SMART	SM00717	1.6	67	104	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	8.051	67	106	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGCKQMDKPK QKHKRGLWSP DEDQKLKDYI LRHGHGCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGT FSIEEEETVL TLHGVFGNKT DNEIKNHWHS YLKKRVIKKA ENEGDARSGY 120 SSPQIGNEES SHSSMKLASQ NSSLDSFEHI ECSLLADTDQ SSSLQVDFAR ENCKSNLPRV 180 LFSEWLSFDQ LNGQDFKNSS NQESKNNFGY NNSVFQDSCM HGPLMNDINQ ALNRGMVDDM 240 FQPTLEFEDH ISADGFEELI SGEFNINGDM MYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	15	106	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629823.1	1e-128	PREDICTED: transcription factor LAF1-like
Swissprot	Q9M0K4	4e-46	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A1S3ZAI0	1e-126	A0A1S3ZAI0_TOBAC; transcription factor LAF1-like
TrEMBL	A0A1U7XLS7	1e-126	A0A1U7XLS7_NICSY; transcription factor LAF1-like
STRING	XP_009629823.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	1e-55	myb domain protein 19

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]