PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00132g00057.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 405aa MW: 45922.6 Da PI: 4.9649 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 175 | 224 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+g Peaxi162Scf00132g00057.1 175 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAYKLRG 224 59******9.**********955...5*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.17E-32 | 174 | 234 | No hit | No description |
SMART | SM00380 | 2.5E-37 | 175 | 238 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 175 | 233 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.866 | 175 | 232 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 175 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 176 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-12 | 176 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 198 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MDASEESNKS KIGMEEDFDD NTFDRQQRRP VFEEASMSHR PFKKTQNSSL SQQTLLPSPV 60 PYNNPTSSRH VFPFAFDGTT QQSMENLYQL RPNTPPLFRP VQQQHQNQQQ MISFSPQQCP 120 YPPYFAGELA PSQLKHWNET LNLSPRGKMM MMSRLGQDSK GLFRPQLQHI SATKLYRGVR 180 QRHWGKWVAE IRLPRNRTRL WLGTFDTAED AAMAYDREAY KLRGDNAKLN FPELFIGKDR 240 EGGEASTAPD STPSSPITPH ESSLPEQPEA LNTELLPQPP PPQPPPEDDN HDEDSGMGSS 300 EVTANDEVQV NLENYGLLEG ASSSQSSELV WGEMAEAWFN AIPTGWGPGS PVWDDLDSSN 360 NFMFPPNMHF GNVHQQEPHN SDPQHQHHHD NTDPSSPSCP MRPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 174 | 232 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 174 | 232 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 174 | 232 | 4 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00458 | DAP | Transfer from AT4G28140 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 3e-90 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592157.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A1S4C0M4 | 0.0 | A0A1S4C0M4_TOBAC; ethylene-responsive transcription factor ERF054-like | ||||
STRING | XP_009592157.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4718 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-53 | ERF family protein |