PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00132g00057.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 405aa    MW: 45922.6 Da    PI: 4.9649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00132g00057.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18175224255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  Peaxi162Scf00132g00057.1 175 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAYKLRG 224
                               59******9.**********955...5*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-32174234No hitNo description
SMARTSM003802.5E-37175238IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22175233IPR016177DNA-binding domain
PROSITE profilePS5103222.866175232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-32175233IPR001471AP2/ERF domain
PRINTSPR003676.7E-11176187IPR001471AP2/ERF domain
PfamPF008476.6E-12176224IPR001471AP2/ERF domain
PRINTSPR003676.7E-11198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDASEESNKS KIGMEEDFDD NTFDRQQRRP VFEEASMSHR PFKKTQNSSL SQQTLLPSPV  60
PYNNPTSSRH VFPFAFDGTT QQSMENLYQL RPNTPPLFRP VQQQHQNQQQ MISFSPQQCP  120
YPPYFAGELA PSQLKHWNET LNLSPRGKMM MMSRLGQDSK GLFRPQLQHI SATKLYRGVR  180
QRHWGKWVAE IRLPRNRTRL WLGTFDTAED AAMAYDREAY KLRGDNAKLN FPELFIGKDR  240
EGGEASTAPD STPSSPITPH ESSLPEQPEA LNTELLPQPP PPQPPPEDDN HDEDSGMGSS  300
EVTANDEVQV NLENYGLLEG ASSSQSSELV WGEMAEAWFN AIPTGWGPGS PVWDDLDSSN  360
NFMFPPNMHF GNVHQQEPHN SDPQHQHHHD NTDPSSPSCP MRPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20174232160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20174232463ATERF1
3gcc_A2e-20174232463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755193e-90HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592157.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S4C0M40.0A0A1S4C0M4_TOBAC; ethylene-responsive transcription factor ERF054-like
STRINGXP_009592157.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-53ERF family protein