PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00129g10011.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Dof

Protein Properties

Length: 456aa MW: 50558.2 Da PI: 6.4487

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00129g10011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grr++k++ Peaxi162Scf00129g10011.1 102 PDKILPCPRCKSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRSKNT 161 7899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.556	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MSEVICTNKD PAIKLFGHTI QFPDFHSSSA GEHEQDHKDQ CDDCRDENEP AEALEGQNHI 60 PEKSDIIKES PSYNDCTTAK TSKSEEGQGE TSDSQEKILK KPDKILPCPR CKSMETKFCY 120 FNNYNVSQPR HFCKNCQRYW TAGGTMRNVP VGAGRRRSKN TVFHYRHISV SEMVPNARTD 180 FPNGTKPSLK LNGSILTFDT DKPLHESMAS VFNVADKTMQ NCSGNGFHKY EELRLPVAYE 240 AGDNEDDHSE GSSVTAVSSK DCGNKDGNCN SFSPNLPCFS GAPWPYPWSS VHWSNAVPPP 300 GYCLPVFPVP FYPATTYWGC TIPGSWNVPW MSPHTASQNQ KPPTSGPNSS TLGKHLRDED 360 VLKLTGSEKE LRKENNPEKC LWFPKTLRID DPGDAAKSSI WATLGIKPDV VDSASAGLLK 420 PFLPKSDERN HVSENSTVLQ ANPAAMSRSL NFNESS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MSEVICTNKD PAIKLFGHTI QFPDFHSSSA GEHEQDHKDQ CDDCRDENEP AEALEGQNHI  60
PEKSDIIKES PSYNDCTTAK TSKSEEGQGE TSDSQEKILK KPDKILPCPR CKSMETKFCY  120
FNNYNVSQPR HFCKNCQRYW TAGGTMRNVP VGAGRRRSKN TVFHYRHISV SEMVPNARTD  180
FPNGTKPSLK LNGSILTFDT DKPLHESMAS VFNVADKTMQ NCSGNGFHKY EELRLPVAYE  240
AGDNEDDHSE GSSVTAVSSK DCGNKDGNCN SFSPNLPCFS GAPWPYPWSS VHWSNAVPPP  300
GYCLPVFPVP FYPATTYWGC TIPGSWNVPW MSPHTASQNQ KPPTSGPNSS TLGKHLRDED  360
VLKLTGSEKE LRKENNPEKC LWFPKTLRID DPGDAAKSSI WATLGIKPDV VDSASAGLLK  420
PFLPKSDERN HVSENSTVLQ ANPAAMSRSL NFNESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792864.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1U7Y0V0	0.0	A0A1U7Y0V0_NICSY; cyclic dof factor 3-like
STRING	XP_009792864.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-98	cycling DOF factor 2