PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00129g01666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44377.1 Da PI: 4.6318 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97 | 2.8e-30 | 52 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp G++F+P+d +l+ +L++k+ + e +e +i++++ i++++P++L+ ++++ +++yfF + ++yatg+rk+r+ Peaxi162Scf00129g01666.1 52 LPHGVKFDPSDVDLL-AHLEAKCGVGNSEQHEfideFIETLEvkdgICYTHPEKLK-GANKDGSSVYFFYRVTNAYATGNRKRRK 134 699************.89****987774443322222332223335*********8.566778899******************8 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+k v++ +g ++g+kk++v+y+ ++k+ekt+Wvmh+y+l Peaxi162Scf00129g01666.1 135 indennlmNVHVRWHKTGKTKVVME-NGLQKGCKKVMVLYQTtkIESKPEKTNWVMHQYHL 194 5666666544899**********99.999***********6522567888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-36 | 37 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.049 | 52 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-13 | 53 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
SWLINGRGLA RKVRNASAPA AHQIKDCGAI WQCPKCQYCI DNNDVSQEWP GLPHGVKFDP 60 SDVDLLAHLE AKCGVGNSEQ HEFIDEFIET LEVKDGICYT HPEKLKGANK DGSSVYFFYR 120 VTNAYATGNR KRRKINDENN LMNVHVRWHK TGKTKVVMEN GLQKGCKKVM VLYQTTKIES 180 KPEKTNWVMH QYHLGTDEDE KEGEYVVSKI FYQQHNQPVK SNDSCINEEA SVGANQTGPT 240 TPKTATPNPP RAGETPSCDD TVDDYLPLSP AQEVEVAKES GQPSDVNIKC ELEYPAFLAG 300 ESQAADVNDV DNSLLCDEII SSYSLLDNFE PNLGTSADYT HNTSHLPQGN VNTTCGIPEL 360 DNLELDTPPD FQLSDFLYHN FPTAPAVHSQ EEEALEER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019241601.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 7e-82 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1J6JND7 | 0.0 | A0A1J6JND7_NICAT; Nac domain-containing protein 8 | ||||
STRING | XP_009799111.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-92 | NAC domain containing protein 44 |