PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00128g01333.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

CAMTA

Protein Properties

Length: 967aa MW: 108001 Da PI: 6.2667

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00128g01333.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	153.3	5.3e-48	13	119	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 +e + rwlk+ e++ iL+n+e+h+ +sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYa Peaxi162Scf00128g01333.1 13 REaQIRWLKPAEVLFILQNHENHQ--------LSSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYA 89 55589**************988........789********************************************** PP CG-1 87 hseenptfqrrcywlLeeelekivlvhyle 116 h+++np+fqrr+yw+L+ ++++ivlvhy++ Peaxi162Scf00128g01333.1 90 HGDQNPNFQRRSYWMLDPAYDHIVLVHYRD 119 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.978	8	126	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.7E-67	11	121	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-40	14	119	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.5E-9	395	482	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.1E-9	398	481	IPR002909	IPT domain
CDD	cd00102	1.53E-4	398	482	No hit	No description
SuperFamily	SSF81296	4.62E-19	398	482	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.4E-13	596	690	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.132	596	661	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.11E-14	600	690	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.31E-12	616	688	No hit	No description
Pfam	PF12796	3.8E-6	617	689	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0038	629	658	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.06	629	661	IPR002110	Ankyrin repeat
SMART	SM00015	15	746	768	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.584	747	776	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	3.45E-5	802	854	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.82	806	828	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.73	807	836	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	809	827	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0056	829	851	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.791	831	855	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.1E-5	832	851	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MAESGYDIND LVREAQIRWL KPAEVLFILQ NHENHQLSSG SLFLFNKRVL RFFRKDGHSW 60 RKKKDGRTVG EAHERLKVGN AEALNCYYAH GDQNPNFQRR SYWMLDPAYD HIVLVHYRDI 120 TEGRHNPAFM SESSPISSIL SPSPSSYSTQ QTGSTVVASE SYEQYQNQCS PGEICSDAVI 180 NSNGMSDITG RTEASNSPGL EMSQALRRLE EQLSLNDDSL KEIYPLYADA INDDSSLIQM 240 QGNSNSLLLQ SHSGESSESH YQPVSQDGHI WKDMPDHYGV SAAAESQTKY LHKLDENVRK 300 VYFVIGSVSG MLQTLSERGT VEAYEGYKWQ DFSEKQAQKA PAPAFKQFDD FKYPTYPPGI 360 NTFGSDADQF TTIFDQGQIG TSLEDEMSLT IAQKQKFTIR DISPDWGYSS ETTKVVIIGS 420 FLCNPSECMW TCMFGDSEVP VQIIQEGVIC CQAPPHLPGK VTLCVTSSNR ESCSEVREFE 480 YRVKPDDCAR NNQPDISAYK SSEELLLLVR FVQMLLSDLS VQKGDRSELS NDFLEKSKAS 540 EDSWTQVIES LLFGTSTSTI TIDWLLQELL KDKFQQWLSC KLQQKDNQMG CSLSRKEQGI 600 IHMVSGLGFE WALHPILNAG VSVNFRDING WTALHWAARF GREKMVASLI ASGASAGAVT 660 DPSSRDPVGK TAASVASSCG HKGLAGYLSE VALTSHLSSL TLEQSELSKG TADVEAEKTI 720 SSISNTSATT NEDQSSLKDT LAAVRNAAQA AARIQSAFRA HSFRKRQQKE AVVASAMGGD 780 EYGILSNDIH GLVAASKLAF RSNTRDHNSA ALAIQKKYRG WKGRKDFLAF RQKVVKIQAH 840 VRGYQVRKQY KVCWAVGILE KVVLRWRRRG VGLRGFRHDT ELIDESEDED ILKVFRKQKV 900 DAALDEAVSR VLSMVESPGA RQQYHRILQK YRQAKAELEG VDSETASTAH GDMSNMENDD 960 IYQFPSY

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MAESGYDIND LVREAQIRWL KPAEVLFILQ NHENHQLSSG SLFLFNKRVL RFFRKDGHSW  60
RKKKDGRTVG EAHERLKVGN AEALNCYYAH GDQNPNFQRR SYWMLDPAYD HIVLVHYRDI  120
TEGRHNPAFM SESSPISSIL SPSPSSYSTQ QTGSTVVASE SYEQYQNQCS PGEICSDAVI  180
NSNGMSDITG RTEASNSPGL EMSQALRRLE EQLSLNDDSL KEIYPLYADA INDDSSLIQM  240
QGNSNSLLLQ SHSGESSESH YQPVSQDGHI WKDMPDHYGV SAAAESQTKY LHKLDENVRK  300
VYFVIGSVSG MLQTLSERGT VEAYEGYKWQ DFSEKQAQKA PAPAFKQFDD FKYPTYPPGI  360
NTFGSDADQF TTIFDQGQIG TSLEDEMSLT IAQKQKFTIR DISPDWGYSS ETTKVVIIGS  420
FLCNPSECMW TCMFGDSEVP VQIIQEGVIC CQAPPHLPGK VTLCVTSSNR ESCSEVREFE  480
YRVKPDDCAR NNQPDISAYK SSEELLLLVR FVQMLLSDLS VQKGDRSELS NDFLEKSKAS  540
EDSWTQVIES LLFGTSTSTI TIDWLLQELL KDKFQQWLSC KLQQKDNQMG CSLSRKEQGI  600
IHMVSGLGFE WALHPILNAG VSVNFRDING WTALHWAARF GREKMVASLI ASGASAGAVT  660
DPSSRDPVGK TAASVASSCG HKGLAGYLSE VALTSHLSSL TLEQSELSKG TADVEAEKTI  720
SSISNTSATT NEDQSSLKDT LAAVRNAAQA AARIQSAFRA HSFRKRQQKE AVVASAMGGD  780
EYGILSNDIH GLVAASKLAF RSNTRDHNSA ALAIQKKYRG WKGRKDFLAF RQKVVKIQAH  840
VRGYQVRKQY KVCWAVGILE KVVLRWRRRG VGLRGFRHDT ELIDESEDED ILKVFRKQKV  900
DAALDEAVSR VLSMVESPGA RQQYHRILQK YRQAKAELEG VDSETASTAH GDMSNMENDD  960
IYQFPSY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566048	0.0	JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553914.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A1U8FC93	0.0	A0A1U8FC93_CAPAN; calmodulin-binding transcription activator 4
STRING	XP_009617256.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]