PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00128g01331.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 467aa    MW: 50727.6 Da    PI: 8.4833
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00128g01331.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40175252178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +CqvegC+ dls+akey+r+hkvC+ h+k+p+v+v+g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  Peaxi162Scf00128g01331.1 175 RCQVEGCSLDLSSAKEYYRKHKVCDSHAKCPKVIVAGVARRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 252
                               6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-30170237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.787173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37175255IPR004333Transcription factor, SBP-box
PfamPF031105.5E-31176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEWNVKWDWG NLVMFDSNVS KSPKELQLTD WGVEEEGELD AGSFNLSSGG SGTGGYGSDV  60
GRGSSIKSSM SASTDSSPRE SLKASNFAFE AFDGSPEDLS KKMGPCSAEL FRNSPVMEAS  120
VGSVEPLIGL KLGKRTCEAI TGGSSAKVSS FPQNPISSAA TKKTKSSCQN TALSRCQVEG  180
CSLDLSSAKE YYRKHKVCDS HAKCPKVIVA GVARRFCQQC SRFHSLSEFD EKKRSCRRRL  240
SDHNARRRKP QQETIQFNSG RLSSLFYDSR QPMSLLLNSA QLIHSKAAAA SSSWESTQDT  300
KFSITREFSL KPERAGSTNG QSLLAGSQLS RVVGAHSNTP NLLLPSKGTA AEVFNRGAKE  360
SMFNMGTGPE FPRALSLLST NSWGSSEPES VSLNRPTHAS HISMAEPIMH AIPQGIPHLS  420
CDYWQAGQNS SYPRNHTLAA NTHTAGFQEI ELFKAPFDSD FYLNALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-27171249684squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352180.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_006352181.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_006352182.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015166302.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A2K9ZXI30.0A0A2K9ZXI3_PETHY; Squamosa promoter binding-like protein 2
STRINGPGSC0003DMT4000847340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-54squamosa promoter binding protein-like 2