PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00126g01131.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SBP

Protein Properties

Length: 1008aa MW: 111372 Da PI: 7.1963

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00126g01131.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska ++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Peaxi162Scf00126g01131.1 152 VCQVEDCQADLSNAKDYHRRHKVCDVHSKAVSALVGNVMQRFCQQCSRFHILEEFDEGKRSCRRRLAGHNKRRRKTHP 229 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-32	146	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.932	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-37	151	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.3E-29	153	226	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	5.1E-6	779	899	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.78E-6	779	890	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.84E-6	780	888	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
METKIGGKIN QFYGPVVSDL NLKAGGKKTM EWDLNDWNWD GDLFTAVPLN SVPSDCRSKQ 60 LFPIGSDVQE IATGVSNSLS SGSDEMGLGI DKVRKELEKR RRAVVSEDDE LNDEAASLNL 120 KLGGQLYPIM EREDGKSGKK SKVAGASSNR AVCQVEDCQA DLSNAKDYHR RHKVCDVHSK 180 AVSALVGNVM QRFCQQCSRF HILEEFDEGK RSCRRRLAGH NKRRRKTHPE NVANGASMND 240 ERGSNYLLIS LLRILANIHS NNADQTKDQD LLSHLLRNLA SLASAANGRN AAGLPSATPD 300 LRNTGTTSEE ICLKDSPQPN GQCMSIPTPE VREKRMGMGG TDCGIPQNRC ASQPDSLYLR 360 KESIPANANV PATSLAGMKL SNIDLNNSYD DSQDGIGKVH NPDATMNLGN GSTGYPLWLC 420 QEPHKSSPTR ISGNSGSTST LSPSNSSGES RTDRIVFKLF GKDPSDFPTT LRKQILDWLA 480 HSPTDIESYI RPGCIILTIY LRMDKSIWEE LYCDLSSSLT KLLNASTDSF WRTGWVYTRV 540 QHRVAFIFNG QVVLDTPLPV TSHRNCRIST IKPLAVSATE GVQFLVKGFN LSRPTTRLLC 600 ALEGKYLVQG SCTDMMGGVD SYIEHEEPQS LGFPCIMPNI TGRGFIEVED HGLCSSFFPF 660 IVAEKDVCSE IRTLENIIEV TETADGFLGE TEELQARDEA LDFIHEMGWL LHRSQLQLRL 720 GSGSNLNLFP FERFKWLIEF SVDHAWCAVV KNLLGIFFNG IVDVRQHSSL DIALQEVGVL 780 HRAVRGNSRS VVEMLLRYSP SGVLDKSGVE KQQGRGSYLF RPDTEGPGGL TPLHIVASVD 840 GYDGLLEALI DDPGQIGTEA WRSARDSTGL TPNDYASLRG HYSYIHIIQK KINQKSSSGH 900 VVVNIPGTLL NSSFKQKLED DHKSVKVGSL QTEKPLTKPI QRQCRLCERK FSYGNMGTTS 960 VAIYKPAMLS MVAIAAICVC VALLFKSSPE VLYVFKPFRW EQLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

METKIGGKIN QFYGPVVSDL NLKAGGKKTM EWDLNDWNWD GDLFTAVPLN SVPSDCRSKQ  60
LFPIGSDVQE IATGVSNSLS SGSDEMGLGI DKVRKELEKR RRAVVSEDDE LNDEAASLNL  120
KLGGQLYPIM EREDGKSGKK SKVAGASSNR AVCQVEDCQA DLSNAKDYHR RHKVCDVHSK  180
AVSALVGNVM QRFCQQCSRF HILEEFDEGK RSCRRRLAGH NKRRRKTHPE NVANGASMND  240
ERGSNYLLIS LLRILANIHS NNADQTKDQD LLSHLLRNLA SLASAANGRN AAGLPSATPD  300
LRNTGTTSEE ICLKDSPQPN GQCMSIPTPE VREKRMGMGG TDCGIPQNRC ASQPDSLYLR  360
KESIPANANV PATSLAGMKL SNIDLNNSYD DSQDGIGKVH NPDATMNLGN GSTGYPLWLC  420
QEPHKSSPTR ISGNSGSTST LSPSNSSGES RTDRIVFKLF GKDPSDFPTT LRKQILDWLA  480
HSPTDIESYI RPGCIILTIY LRMDKSIWEE LYCDLSSSLT KLLNASTDSF WRTGWVYTRV  540
QHRVAFIFNG QVVLDTPLPV TSHRNCRIST IKPLAVSATE GVQFLVKGFN LSRPTTRLLC  600
ALEGKYLVQG SCTDMMGGVD SYIEHEEPQS LGFPCIMPNI TGRGFIEVED HGLCSSFFPF  660
IVAEKDVCSE IRTLENIIEV TETADGFLGE TEELQARDEA LDFIHEMGWL LHRSQLQLRL  720
GSGSNLNLFP FERFKWLIEF SVDHAWCAVV KNLLGIFFNG IVDVRQHSSL DIALQEVGVL  780
HRAVRGNSRS VVEMLLRYSP SGVLDKSGVE KQQGRGSYLF RPDTEGPGGL TPLHIVASVD  840
GYDGLLEALI DDPGQIGTEA WRSARDSTGL TPNDYASLRG HYSYIHIIQK KINQKSSSGH  900
VVVNIPGTLL NSSFKQKLED DHKSVKVGSL QTEKPLTKPI QRQCRLCERK FSYGNMGTTS  960
VAIYKPAMLS MVAIAAICVC VALLFKSSPE VLYVFKPFRW EQLKYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	144	226	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	227	KRRRKTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	3e-58	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975441	3e-58	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975444	3e-58	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253402.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A2K9ZXI9	0.0	A0A2K9ZXI9_PETHY; Squamosa promoter binding-like protein 12d
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12