PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00123g01118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 530aa MW: 59077.4 Da PI: 8.2407 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.2e-10 | 415 | 462 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v+q+G g+W+ I + +Rt+ ++k++w+++l Peaxi162Scf00123g01118.1 415 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssVHRTPVDLKDKWRNLL 462 ***************************999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.016 | 407 | 466 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-14 | 408 | 469 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 411 | 464 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.36E-16 | 414 | 472 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.05E-20 | 415 | 463 | No hit | No description |
Pfam | PF00249 | 1.1E-7 | 415 | 462 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MLILEPHADH SSVSGVVCFD EKRVIKGMER ESFLYSIDSS IARKREGGIN QEVLDLKQSH 60 FGAGKIQAQN DLSSTCEDYL LDIEFAESIT NLDYGSSKGL LDPILESQIP LSSSDGTDAC 120 GMSYSSGLAV QEAQSQNAVF GLTNSELHDL SPNKCEGQML LDYNAVKFPT TFTPGDISNV 180 DDVADFFAED ASSEKMNDSL VDHSALTSKR NSFMSNATQN EGLDVDRESY DMHESLAAIS 240 PPATSQAMNI DAPLTQKRLR KPTRRYIDES SDLNATRPRK KGEVSTPASK DKLLRVRCQK 300 KSRTESMEAE FFPEESSCIA IQVPFASLGN EECHKRHASN AIQVPKSHME AVVLKSHKES 360 AVLKSHKEAT VLKSHKDATV LKSHKDATVV DSRDDAGAHK NLDQDGTRRK HHRLWTVSEV 420 RKLIDGVAQY GVGRWSHIKK LYFSSSVHRT PVDLKDKWRN LLKASYLQKQ SKITGKGKHN 480 LSWRPLPKSI LHRVSELANM HPYPRNQRCK RSHSPSPPSS PMHTNKNNIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605404.1 | 0.0 | PREDICTED: uncharacterized protein LOC104099973 isoform X1 | ||||
Refseq | XP_016452320.1 | 0.0 | PREDICTED: uncharacterized protein LOC107776885 isoform X1 | ||||
TrEMBL | A0A1S3YJN5 | 0.0 | A0A1S3YJN5_TOBAC; uncharacterized protein LOC107776885 isoform X1 | ||||
STRING | XP_009605404.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9155 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 6e-30 | TRF-like 6 |