PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00122g02520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WOX | ||||||||
Protein Properties | Length: 226aa MW: 26044.2 Da PI: 5.051 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.4e-21 | 75 | 135 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Peaxi162Scf00122g02520.1 75 RQRWTPTPVQLQILERMFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 135 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.2 | 7.3e-33 | 75 | 137 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq Peaxi162Scf00122g02520.1 75 RQRWTPTPVQLQILERMFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 137 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.3E-13 | 73 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-18 | 74 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.4E-19 | 75 | 135 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 75 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.29E-12 | 75 | 137 | No hit | No description |
PROSITE profile | PS50071 | 14.301 | 75 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEWDKQLQQE PPQRVEDMNG TGGGGMFVKI MTDEQMEVLR KQIAVYAVIC EKLVDLHKSM 60 ASQHDLAAGH RICGRQRWTP TPVQLQILER MFDQGNGTPS KQKIKDITFE LSQHGQISET 120 NVYNWFQNRR ARSKRKQQVT GNNVVESEVE TEVESPNEKK TKPEDLQYSD ILTSKAEEGS 180 SRPAENFDQL SFYAMSNPRM DQLIEKMEDA ASYHPYLHEE NFDMTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253116.1 | 1e-129 | PREDICTED: WUSCHEL-related homeobox 13-like isoform X1 | ||||
Swissprot | Q5QMM3 | 2e-68 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A1J6IHE1 | 1e-127 | A0A1J6IHE1_NICAT; Wuschel-related homeobox 13 | ||||
STRING | XP_009801335.1 | 1e-121 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5675 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-64 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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