PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00118g00310.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 249aa    MW: 28530.4 Da    PI: 8.9911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00118g00310.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-181360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd+ll ++++++G g W++++ + g++R++k+c++rw++yl
  Peaxi162Scf00118g00310.1 13 KGAWTEEEDLLLRECIEKYGEGKWHLVPVRAGLNRCRKSCRLRWLNYL 60
                              79********************************************97 PP
2Myb_DNA-binding49.97.5e-1666111148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg ++ +E el+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Peaxi162Scf00118g00310.1  66 RGDFSLDEVELILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 111
                               799*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23863IPR009057Homeodomain-like
PROSITE profilePS5129424.861864IPR017930Myb domain
SuperFamilySSF466896.97E-2910107IPR009057Homeodomain-like
SMARTSM007172.2E-151262IPR001005SANT/Myb domain
PfamPF002498.2E-171360IPR001005SANT/Myb domain
CDDcd001677.86E-111560No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2364114IPR009057Homeodomain-like
SMARTSM007171.2E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129419.66565115IPR017930Myb domain
PfamPF002492.6E-1466111IPR001005SANT/Myb domain
CDDcd001673.66E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSTSNASTSG VRKGAWTEEE DLLLRECIEK YGEGKWHLVP VRAGLNRCRK SCRLRWLNYL  60
RPHIKRGDFS LDEVELILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTH LRKKNKRARA  120
SKAMKITENN IIKPRPRTFS RPAMNHVSCW NGKSCNKNTI DKNEGDTEII KFTDEKQKPE  180
ESIDDGLQWW ANLLANNIEI KDLANGNSPT LLHEEIAPLV NIESNLMQEG ESGLSDFSVD  240
IDGIWDLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23131147107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1467070.0AF146707.1 Petunia x hybrida An2 truncated protein (an2) mRNA, an2-W44 allele, complete cds.
GenBankEF4238390.0EF423839.1 Petunia axillaris strain N nonfunctional anthocyanin 2 (AN2) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240653.12e-99PREDICTED: transcription factor MYB113-like
RefseqXP_019240654.12e-99PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV92e-64MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3G8FWZ01e-174A0A3G8FWZ0_9SOLA; MYB transcription factor AN2
STRINGXP_009626596.11e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-63myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]