PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00114g00127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 284aa MW: 32385.1 Da PI: 7.4934 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.4e-16 | 14 | 93 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqk 46 rg+W++eEd +l++ ++++G+g +W+ Ia+ ++ gRt++++k++w++ Peaxi162Scf00114g00127.1 14 RGPWSPEEDAKLKEFIEKYGTGgnwialpqkaaytptleagkknisyievklihlcdRWSIIAAQLP-GRTDNDIKNYWNT 93 89*****************************************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 5 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.302 | 9 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-12 | 11 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 13 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-6 | 14 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-10 | 16 | 95 | No hit | No description |
Pfam | PF00249 | 2.8E-6 | 70 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 71 | 99 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKEFIE KYGTGGNWIA LPQKAAYTPT LEAGKKNISY 60 IEVKLIHLCD RWSIIAAQLP GRTDNDIKNY WNTKLKKKLM GLMHSSNQRK SPFFPSTTLQ 120 TITPTQPQTI SSLFRYSYQE PNISSVQPNF MYNNNHMNFQ LGTNNQYSYF HCQESLVNPI 180 KQEEMGNCLE GQTPRTFDHE TQKFTLDYGN NIGGGGDHNL SAWAHDQKPN GYLANNFQTQ 240 FQYDVEEIKE LISSSSNGSG CNNNSSLLFV NDENKPNERG MFYY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-38 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616199.1 | 1e-107 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S4BJ10 | 1e-100 | A0A1S4BJ10_TOBAC; transcription factor RAX2-like | ||||
STRING | XP_009616199.1 | 1e-106 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-43 | myb domain protein 36 |