PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00111g01236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | STAT | ||||||||
Protein Properties | Length: 672aa MW: 75798.7 Da PI: 5.6894 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 192.4 | 4.7e-60 | 213 | 332 | 1 | 120 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfri 85 ldv+l++ +++p++ +vevvasL+yad+ ++veksdd+eapLL+sydG+e++s+drp+k++ GrasfklkisqLsskcdnrLfri Peaxi162Scf00111g01236.1 213 LDVTLMDNFSRPMTEEVEVVASLVYADNEAPVEKSDDDEAPLLTSYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFRI 297 89*********************************************************************************** PP STAT 86 kfeipklkkypfleavskpirCisrsrntrssslt 120 +f+ipk+ kypfle++s+p+rCisr+rn r++sl+ Peaxi162Scf00111g01236.1 298 RFDIPKMGKYPFLEVLSRPVRCISRNRNIRATSLM 332 ******************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 2.8E-5 | 20 | 143 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 2.85E-9 | 20 | 132 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 6.78E-8 | 605 | 668 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 5.0E-6 | 605 | 664 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.152 | 606 | 672 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MGFQDHVFLK DLQVEFKDYE ETNGFSLCFW FFLNEASTLP STILHQEHPD VMSHVPFLLL 60 DEKKRILLFP LQSSSHSNVT SWREVTYATS LNEFPTKRWV HIGCEVRHDL LRLYLDGEIV 120 GEMALTSSIN NDLGSDSSRI SLTCISGKYS QLDGYAHGAE LLPIVSSIKG HYVKDPPVQL 180 SIDSSSAYEI EEDTDGVWSI VSGKASCRRN FSLDVTLMDN FSRPMTEEVE VVASLVYADN 240 EAPVEKSDDD EAPLLTSYDG IEYASSDRPS KVISGRASFK LKISQLSSKC DNRLFRIRFD 300 IPKMGKYPFL EVLSRPVRCI SRNRNIRATS LMLTKSSLGT HLLNGSQSPE LEDGSSDLLP 360 CIVREAKPSP SSKRVKLGQE KLCANFKDDF VLKQANGESK SHSWTSEDNY AYRNPLVARP 420 VIHGGAENFS SDSENSETTN LVLDDLPSNR DPISDLAVFK YCLGDLNERR LLLKEMAMTA 480 RQEELAAFSE KVSLFSGCSH HRHQISISKR LIEEGIKCWN LISNDNHHVL WDTLVCGLQE 540 HFLKTTFGCN RSLTLQDFSL LRRVAGCQDL VSQDNFEKLW CWLYPVAFTL SQQCITSLWL 600 SRSPLWIEGF ITKEEAESSL RGLGALQDPG TFVLRFPTSR SWPHPDAGNL VVTYVGSDSN 660 IHHRLVSLDF IY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210354 | 1e-135 | AC210354.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0102J11, complete sequence. | |||
GenBank | HG975519 | 1e-135 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348345.1 | 0.0 | PREDICTED: uncharacterized protein LOC102592228 | ||||
TrEMBL | A0A0V0INF7 | 0.0 | A0A0V0INF7_SOLCH; Putative ovule protein | ||||
STRING | Solyc07g062050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9394 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |