PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00110g00004.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 72aa MW: 8625.82 Da PI: 9.3653

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00110g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2.1e-08	8	45	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l+ v+ lG + ++R++k+c++rw++yl Peaxi162Scf00110g00004.1 8 RGQWLEEEDERLAMIVASLGER----------LRRSGKSCRLRWLNYL 45 899***************99..........67999********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-10	2	48	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.419	3	49	IPR017930	Myb domain
SMART	SM00717	0.0018	7	47	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-7	8	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.26E-14	9	72	IPR009057	Homeodomain-like
CDD	cd00167	0.00111	11	45	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-6	49	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MQEQGQRRGQ WLEEEDERLA MIVASLGERL RRSGKSCRLR WLNYLRPNLN HGHITEDEER 60 LIIQLQKQLG NK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543396.1	2e-33	PREDICTED: transcription factor MYB48-like
Refseq	XP_018633117.1	8e-34	PREDICTED: transcription factor MYB48-like
Swissprot	Q9SCP1	6e-21	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A1U8EAE5	4e-32	A0A1U8EAE5_CAPAN; transcription factor MYB48-like
STRING	Solyc10g083900.1.1	8e-33	(Solanum lycopersicum)
STRING	XP_009625011.1	1e-32	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	2e-23	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]