PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00108g00911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 1609aa MW: 175440 Da PI: 6.9887 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1.1e-07 | 806 | 847 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E e++++ + +G++ +++Ia+ + ++t +c+++++k Peaxi162Scf00108g00911.1 806 PWTSVEREIFIEKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 847 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 30.1 | 1.2e-09 | 928 | 968 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ + I+r++ +R++ qck ++ Peaxi162Scf00108g00911.1 928 DWTDEEKSIFIQAVSAYGKD-FVMISRCVR-TRSRDQCKIFFS 968 5*****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-13 | 789 | 850 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.617 | 802 | 853 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-8 | 803 | 851 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 806 | 847 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-5 | 806 | 847 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.574 | 924 | 975 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-8 | 925 | 973 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-10 | 926 | 975 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 928 | 969 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-7 | 928 | 967 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.40E-7 | 929 | 967 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1609 aa Download sequence Send to blast |
MPSEPLPWDR KDRKHDALAG GGTRWREAPP PPHHHRTTCF ADCRSSRAPP PTGHGKQGGW 60 HMYPEESGHG FMPSTRLNEK MIVEDDNCRQ SRGDGGKYGR SSSSSRENRS FGQRDWRGGS 120 HSSPSGPARQ NDVTNDQRSG DGMVTHNSEY INGWDQSHHS RDQHNKSGSV NGVAASTGQR 180 VDRENSLGSV EWRPLKWTRS GSLSSRGSLS HSGSSKSMGV DSSETKPELQ PGNSKPVQSL 240 NGDANACVTS AAPSEETTSR KKPRLGWGEG LAKYEKKKVG PEDCAVKAGA SISGDSVEAG 300 HSHPLNLADK SPRVAAFLDC PSPATPSSVA CSSSPGLEDK QLVKSTNNDQ DVGNLSASPS 360 VVSQYHSEGL AFNLESFDLA QISNLNSSIN ELLQSEDPSS VDSGFMRTTA VNKLLLWKSD 420 ITKALEKTEA EIDSLENELK TLISEPKNTQ VVPSASCSPP KECNSVSHED QGTTSNIASR 480 PPPLQVVIPD DVTGEEGANI QDNERTEMKV EDIDSPGSAT SKFVELPSEK NVAPVDAMKP 540 DLGMLIIDDN KSGSFDVKAC SFIEEKTKCR SSDGKACGVS EEKSRDTLAC GLGSQTTVSC 600 SLSVCDGSLS CGEDALYNLI LAANKDSAHR AFEVFENLLP AGECTFDFPR DVSVSSLPID 660 PAVKERFARR KQFQKFKEKI IALKFRVHQH LWKEDMLSVR KFRARSQKKF DLSPRPVQIG 720 HQKQRSTVRS RFSTAVGNLS PVPSSEILNF ASRLLSDIGA KVYRNTLRMP ALILDQKEKT 780 MSRFISKNSL VEDPCAVEKE RFLINPWTSV EREIFIEKLA TFGKDFRKIA SFLDHKTTAD 840 CIEFYYKNHK SDCFERTKKK PDYSKQAKVC SANTYLVASS GKRWNRNQEW KHQKVGSSTR 900 FPPTSEVAQS IDDETCSDES CGEMDPTDWT DEEKSIFIQA VSAYGKDFVM ISRCVRTRSR 960 DQCKIFFSKA RKCLGLDKIL PGPGNLERQD VNGGSDPDAC VIETELLCNE KSSLKLEEIN 1020 EFCVKGGISK PDMTSSDDKD GAGELDSVDT EPVSKNSVQV NCHVDKQEVE FNRECEIQTG 1080 ACTGNGRGHD NIVRVSPEGV QIDGHASENG LPDIVRANKV SAKHLGEEIN GVVSLPQHGL 1140 KDIKAEMAEV SRSNCSLEDM KPNMVPSGSI SHLAAARGEL CPLNGSQNMT VLESDSKYKS 1200 DVNYSVSNIS VQRKQIHQAS NADNSLDLGL ENVDNATQSP EQSLPSTSRL AHVESCQVRG 1260 SYSLGETAPK ESGDSGSSTS TALRDIKNVV RNLHSDTFST TSCFLQKCNG INRSGSVSDL 1320 PIPNREPMGG SSSKVEKPCR NGDVKLFGQI LSKPCAQQSA SSNSQQSNGN IQQLKVCSNS 1380 LGASHSLDGN PASTAKFERN NFLSSENHPV RSFGFWDGNR IQTGFSALPD SAILLAKYPA 1440 AFGNYALSSS KMEQSALHGV VKTTERNLNG VPVFPARDVS SNNGVAADYQ VYSNREVQPF 1500 TIEMKQRQEA VFSEMQRRNG FDVVSGMQQQ ARGVVVGRGG GILVGGQCTG VVSDPVAAIK 1560 MHYAKAEQFS GQASIIREDD SWRSKGDISR KRVRSGLFPL KMIIIAYFG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803598.1 | 0.0 | PREDICTED: uncharacterized protein LOC104248943 | ||||
Refseq | XP_016486022.1 | 0.0 | PREDICTED: uncharacterized protein LOC107806392 | ||||
TrEMBL | A0A1S4BAX1 | 0.0 | A0A1S4BAX1_TOBAC; uncharacterized protein LOC107806392 | ||||
TrEMBL | A0A1U7YKF2 | 0.0 | A0A1U7YKF2_NICSY; uncharacterized protein LOC104248943 | ||||
STRING | Solyc04g049120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-116 | MYB family protein |