PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g01717.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 250aa    MW: 28244.8 Da    PI: 5.4667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g01717.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-1869119155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y+GVr++k +g+W+AeIr+p +   r r +lg++ taeeAa  +++a++ ++g
  Peaxi162Scf00102g01717.1  69 KKYRGVRQRK-SGKWAAEIRVPMK---RVRLWLGTYKTAEEAAMVYDNAALLFRG 119
                               59********.7*********854...5**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-3169126No hitNo description
PfamPF008472.1E-1070119IPR001471AP2/ERF domain
SMARTSM003801.8E-3670133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2870127IPR001471AP2/ERF domain
PROSITE profilePS5103222.04970127IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2070127IPR016177DNA-binding domain
PRINTSPR003673.8E-87182IPR001471AP2/ERF domain
PRINTSPR003673.8E-893109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MNVATCPRVV RISVTDADAT DSSSDDEEEG VISHRVKKYV NEVKMEPYST KHNGESNCKL  60
VKKRRNYEKK YRGVRQRKSG KWAAEIRVPM KRVRLWLGTY KTAEEAAMVY DNAALLFRGP  120
DALTNFGTVQ NLESYRSVLR FDAGVNSFSS ENFSDWSPFD NLFPNFEYPV PVPDLFEAAA  180
AMPEINFGED YMFGLSDDFG FGSFTRPVDD YFGDIFGTLV LPVASGSCYD LIMARLRNVT  240
GKAIYDTCVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1569126462ATERF1
3gcc_A4e-1569126462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240845.14e-62PREDICTED: ethylene-responsive transcription factor CRF2
SwissprotQ9SUE33e-38CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1J6KL081e-60A0A1J6KL08_NICAT; Ethylene-responsive transcription factor crf2
STRINGXP_009603046.11e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-31cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]