PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g01226.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 285aa    MW: 32429.4 Da    PI: 5.2398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g01226.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131463148
                              TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WTteEd++l+        g  +W+++++  g++R++k+c++rw +yl
  Peaxi162Scf00102g01226.1 14 KGPWTTEEDKKLISFLVTNNIGqcCWRSVPKLAGLRRCGKSCRLRWTNYL 63
                              79************9877766677************************97 PP
2Myb_DNA-binding47.25.1e-1572113447
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                T+ E+ l +d++  lG++ W++Ia++++ gRt++++k++w+++
  Peaxi162Scf00102g01226.1  72 LTEAEENLVIDLHSCLGNR-WSKIAARLP-GRTDNEIKNHWNTH 113
                               699****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-19565IPR009057Homeodomain-like
PROSITE profilePS5129411.753963IPR017930Myb domain
SuperFamilySSF466896.68E-2511110IPR009057Homeodomain-like
SMARTSM007176.2E-81365IPR001005SANT/Myb domain
PfamPF002495.4E-121463IPR001005SANT/Myb domain
CDDcd001671.69E-61663No hitNo description
PROSITE profilePS5129426.28664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2466118IPR009057Homeodomain-like
SMARTSM007174.3E-1368116IPR001005SANT/Myb domain
PfamPF002492.9E-1371113IPR001005SANT/Myb domain
CDDcd001676.91E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRKPCCDKV GVKKGPWTTE EDKKLISFLV TNNIGQCCWR SVPKLAGLRR CGKSCRLRWT  60
NYLRPDLKRG LLTEAEENLV IDLHSCLGNR WSKIAARLPG RTDNEIKNHW NTHIKKKLLK  120
MGIDPVTHEP LNKEEKSRDQ STKTDDIDNK QNGHDDQQVH VVLESTNVTA AATSLELENS  180
SLCSSSSFSP NENSSCITDE SQMVLDTFSE NNPLLSSMLH VDAPLIDFQW ELSASGTTQK  240
QNLDNENFNW LVDCQDFGIH DFDFDCFNME MEYFLDSIGD IKNEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092684e-45AP009268.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0060C12, complete sequence.
GenBankHG9755204e-45HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595050.11e-143PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-122ODO1_PETHY; Protein ODORANT1
TrEMBLA0A1J6IIR81e-127A0A1J6IIR8_NICAT; Myb-related protein pp2
STRINGXP_009595050.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.12e-85myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]