PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g00835.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 532aa    MW: 59509.4 Da    PI: 7.0411
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g00835.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.51.6e-121646535
                      GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              ++t TplWR+gp  ++ LCnaCG ++r kg+
  Peaxi162Scf00102g00835.1 16 HATGTPLWRNGPPEKPILCNACGSRWRTKGT 46
                              6899********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-41258IPR000679Zinc finger, GATA-type
PfamPF003202.7E-101646IPR000679Zinc finger, GATA-type
CDDcd002021.20E-111660No hitNo description
SuperFamilySSF577168.55E-71750No hitNo description
Gene3DG3DSA:3.30.50.101.2E-81746IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.6E-9281369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
FFHVIYFDAA GNHKIHATGT PLWRNGPPEK PILCNACGSR WRTKGTLANY TPLHARAEPC  60
DFEEHRVSRF KSMSMKNKEA KVLKRKQSHD YAEVLTTPDY NLGFRKSLEE DTSNRSSSGS  120
AFSNSESCAQ FGSAEASDLT GTAQSNIWDT TVPSRKRTCF NRPKPSSVEK LTKDLYTILH  180
EQQGSCFSAC SEEDLLFESD KPMVSVEIGH GSMLIRHPSS IGRDDESEVS SLSVDNKHRA  240
VNDAYSRSTT PPVNNSKGVN SLNLGTERTK KPTGQAVQQD QIKRNKDHLE KLQILGHHNS  300
PLRYIDMKDI LNYEEFMRHL SSDEQQQLLK YLPPADSFAP PDSLRSMFES SQFEESLSSF  360
QTLLAEGVFD NSLPGVKLED CRTLKRFILC YLAKSKWVEQ YNLIKDTKCK SSSSGSEVAG  420
EASAIGTSYS VNVNRQRDEQ HLKYSGSKTA MKIPKRVVMK SIYEQKEIAD NDSSCFSSPK  480
SSFALPSESS SLVLDSFRSA NENSDQDLLL DVPSNSYFPQ AELLLPTSSF TT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-141HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254133.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-134GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1J6II940.0A0A1J6II94_NICAT; Gata transcription factor 26
STRINGXP_009789570.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-121GATA transcription factor 26