PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00097g01810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 686aa MW: 76474.9 Da PI: 5.2567 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 111 | 132 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff++ G C Gd+C F+H Peaxi162Scf00097g01810.1 111 VPCIFFQQ-GLCLKGDKCAFMHA 132 79******.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.793 | 17 | 46 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.4E-11 | 18 | 72 | No hit | No description |
SMART | SM00356 | 0.0023 | 18 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.235 | 48 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 109 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.0051 | 112 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MVGPTQPPPP SAEEEALKRN TDCVYFLASP LTCKKGSECE YRHSDMARLN PRDCWYWLNG 60 NCLNPKCAFR HPPLDGLLEA QTPTVMGSSV APVMSAASMP QVPYASSKQG VPCIFFQQGL 120 CLKGDKCAFM HAPNFFFNKP LQPPVSTASS ESPTVKKAFG GVEKSQQGKN LSQTKNLKPH 180 ELPKPVGKLE NHLTKNDNAV DENALPPNSV INREHFRYKP TNMPHTNGNP FSGPKRVQQP 240 IGIDDHSSMQ NKDDEISREP SPGFDVLVDD ELRGSDYYHG EDQYGGTRSN GGGNEYEMGD 300 SADYDSVADI DQDMYRDVRG YDSYDGLQGH YAWEQHMASS ERIPGGSAHL ERSRYDNVDR 360 PEQVKTSDLR HKLSKHRRSN GLKSVISHDF ESEKHVEDQV NKSSRRDAPR YLPPHDSSLS 420 GRLRGRIKLP VWSSSPTDRA ESRLDRGMDR VRDRGRLSSE RPQVSSYQGR LQERIKGRVQ 480 EDLNNGGRNN RGPPLRRDIN DNNSSFSGPK SLAEIKGRKT AESSEEKLNE QQPLGKRKFQ 540 KLDSKEDLSF EGPKPLQEIL KRKRGGGTDM ASGASEDQSA MTKNGSDHSI QKEESKLASG 600 DSNGPQETKV ADQQSPLHLN ANELEAEDEM IVEGADAQDH EGYDQGYGDD DYEPVEGEDY 660 NLDEGDEEYL DDDDDDFAKK LGVVSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623001.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A1S4A1X7 | 0.0 | A0A1S4A1X7_TOBAC; zinc finger CCCH domain-containing protein 17-like isoform X1 | ||||
STRING | XP_009623001.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |