PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00096g01718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 315aa    MW: 35837.2 Da    PI: 7.1353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00096g01718.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+ +++++G+g +W t ++++g++R++k+c++rw++yl
  Peaxi162Scf00096g01718.1 14 RGPWSPEEDAKLKAYIELHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                              89*********************************************97 PP

2Myb_DNA-binding40.46.6e-1369111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00096g01718.1  69 GEFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               78*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.37962IPR017930Myb domain
SuperFamilySSF466894.08E-2711109IPR009057Homeodomain-like
SMARTSM007176.7E-131364IPR001005SANT/Myb domain
PfamPF002491.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001672.53E-91662No hitNo description
PROSITE profilePS5129422.84863117IPR017930Myb domain
SMARTSM007173.5E-1267115IPR001005SANT/Myb domain
PfamPF002491.8E-1169111IPR001005SANT/Myb domain
CDDcd001672.26E-870113No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKAYIE LHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKDHRHHKL EMMKENENYF ASQDINAYSW PPQPLLFSSL VAPTNEYQQS GSSGNRHNFQ  180
YSTEVSAQFD PSKFSQSSAF VNPLSGNTCN SLSCYYPISN GVITNSFQEY NNYISVGLDH  240
DVLNVSNLQQ VDQSVIEMVN SSSTIISTTS PEISTSWEEL SPIVFPPSVS NFEIQQEISP  300
YFVFEEPRYL GLLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630071.11e-158PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y93e-81RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A1S3ZS061e-156A0A1S3ZS06_TOBAC; transcription factor RAX3-like
STRINGXP_009630071.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-77myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]