PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00096g01718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35837.2 Da PI: 7.1353 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g +W t ++++g++R++k+c++rw++yl Peaxi162Scf00096g01718.1 14 RGPWSPEEDAKLKAYIELHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.4 | 6.6e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Peaxi162Scf00096g01718.1 69 GEFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.37 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.08E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.53E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.848 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKAYIE LHGTGGNWIT LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKDHRHHKL EMMKENENYF ASQDINAYSW PPQPLLFSSL VAPTNEYQQS GSSGNRHNFQ 180 YSTEVSAQFD PSKFSQSSAF VNPLSGNTCN SLSCYYPISN GVITNSFQEY NNYISVGLDH 240 DVLNVSNLQQ VDQSVIEMVN SSSTIISTTS PEISTSWEEL SPIVFPPSVS NFEIQQEISP 300 YFVFEEPRYL GLLKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630071.1 | 1e-158 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 3e-81 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1S3ZS06 | 1e-156 | A0A1S3ZS06_TOBAC; transcription factor RAX3-like | ||||
STRING | XP_009630071.1 | 1e-157 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 1e-77 | myb domain protein 84 |
Publications ? help Back to Top | |||
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