PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00089g01411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 33517.2 Da PI: 4.8827 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.5e-15 | 14 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEde+l ++++++G g+W+++++ g Rt++++k++w++ Peaxi162Scf00089g01411.1 14 KGLWSPEEDEKLCNYITKFGVGSWSSVPKLAG--RTDNEIKNFWNS 57 678****************************8..**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 6 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.03E-15 | 8 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.821 | 9 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-12 | 13 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 14 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-10 | 17 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRHACCVKQ KLRKGLWSPE EDEKLCNYIT KFGVGSWSSV PKLAGRTDNE IKNFWNSSLK 60 KKLMKQGIDP NTHMPLSENT QVRDEENCTD KTSMLQMPHL NGLPSAEMDQ TFHTTNRSFN 120 TEAKNGHLTE ASKEDQFVSK QVFDIMFLHG YQSNVNPSAY DSEVLAQYQQ IIRSYDHPSE 180 FEENPNYGIC SETSLTKFEH GQTTETDFAS SSSNSSNICG YQNNATRIRT NGMLEINETL 240 SWDVENKMES IFQYPYIEIK NEELKQRPGD FSNCPLSCLT EELCGANLDV IQQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 6e-41 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 6e-41 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487611.1 | 1e-131 | PREDICTED: transcription factor MYB32-like | ||||
TrEMBL | A0A1S4BFJ7 | 1e-130 | A0A1S4BFJ7_TOBAC; transcription factor MYB32-like | ||||
STRING | XP_009598410.1 | 1e-129 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-31 | myb domain protein 86 |