PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00089g00027.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 463aa    MW: 51678.4 Da    PI: 6.1499
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00089g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.31.2e-116904621374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalk 82 
                               lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  +  +++  +++ + s+++   +++  al+
  Peaxi162Scf00089g00027.1  90 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFMQGLADRLALvQPLGTVGYIATPAMSKTDiaLEKKEEALR 174
                               689**************************************************9844445555555555555556688899999* PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162
                               l++e++P ++f+h++aN+ Ilea+ege+ +H++D+++s    +G QW  L+q+La+Rp++pp +lRiT+vg+      e+ + +g
  Peaxi162Scf00089g00027.1 175 LLYEICPHIQFGHFVANSSILEAFEGESFIHVVDLGMSiglpHGHQWRRLIQSLANRPGQPPrRLRITAVGQ----TIEKFQVIG 255
                               ***********************************9874444778*************877779********....99******* PP

                      GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               + L+ +A +lg+++ef++ v+++le+l++++++v  gE+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+++
  Peaxi162Scf00089g00027.1 256 DELEAYAGSLGINLEFSA-VESNLENLKPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVIHELSPKILVLVEQDSS 336
                               ******************.79*******************************88877777...8********************* PP

                      GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                               hn++ Fl rf+eal+yysa+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  
  Peaxi162Scf00089g00027.1 337 HNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK-- 419
                               *********************************************************************************96.. PP

                      GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++qak  l+kv+  +g+++ ee+g+lvlgWk++p+v++S+W+
  Peaxi162Scf00089g00027.1 420 MVSQAKQWLAKVNaYEGFTITEEKGCLVLGWKSKPIVAASCWK 462
                               79****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.40664443IPR005202Transcription factor GRAS
PfamPF035144.1E-11490462IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MTYDMVTGFL SLEPCNGDQI GYEPLEYYLS HKELAYSLNP YTAVLKRNAA SMISTLYLAA  60
EAIEEAASDI IGSERRGCDE DQENGEGMKL VQLLITCAEA VACRDKSRAS VLLSELRASA  120
LVFGTSFQRV ASCFMQGLAD RLALVQPLGT VGYIATPAMS KTDIALEKKE EALRLLYEIC  180
PHIQFGHFVA NSSILEAFEG ESFIHVVDLG MSIGLPHGHQ WRRLIQSLAN RPGQPPRRLR  240
ITAVGQTIEK FQVIGDELEA YAGSLGINLE FSAVESNLEN LKPKDIKVYD GEVLVVNSIL  300
QLHCVVKESR GALNSVLQVI HELSPKILVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL  360
DVMLPKYDTR RAKIEQFYFA EEIKNIVSCE GPARVERHER VDQWRRRMSR AGFQAAPIKM  420
VSQAKQWLAK VNAYEGFTIT EEKGCLVLGW KSKPIVAASC WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-63724611378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603492.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016441386.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3XN640.0A0A1S3XN64_TOBAC; DELLA protein RGL1-like
STRINGXP_009603492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-78RGA-like 1