PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00085g02316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | AP2 | ||||||||
Protein Properties | Length: 563aa MW: 62223.8 Da PI: 7.064 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.4 | 2.7e-11 | 250 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +e+Aa+a++ a++k++g Peaxi162Scf00085g02316.1 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 306 57*******************4444.2344336655.779999**************98 PP | |||||||
2 | AP2 | 26.8 | 1.3e-08 | 349 | 383 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 s y+GV++++++grW A+I + +k +lg+fg Peaxi162Scf00085g02316.1 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 383 57****************988532...5*********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.36E-20 | 250 | 316 | No hit | No description |
SuperFamily | SSF54171 | 5.69E-15 | 250 | 315 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-9 | 250 | 306 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-22 | 251 | 320 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 251 | 314 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-12 | 251 | 315 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 252 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 296 | 316 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.98E-12 | 349 | 439 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-5 | 349 | 383 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.999 | 350 | 439 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-19 | 350 | 445 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-4 | 350 | 382 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-6 | 413 | 439 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-5 | 413 | 440 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MAPADNNNWL SFSLSSMEML STSSSSHHQS SMLHQSNNMK LAPTSFDGSS SADSHHYYFA 60 DNFFPHGWSN PKNQQMMYTE GDQKEVIGLN NVCTNGDSLI FQNYLDSQIH QQPPPKLEDF 120 FAESSSLTHD DSSLTTQIYN FNDHQDLKSI AGFQAFSTNS GSEVDDSGSV GKTLTAYNTS 180 GESCNELASY SQCCVPPPPT TGTLSLSVNV NQQQQQSLLE EKEKAIVVAA VPVDSESCKK 240 ISDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE EKAARAYDLA 300 ALKYWGPTAT TNFPVTNYAK ELEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ 360 GRWQARIGRV AGNKDLYLGT FGKINFLNST WSTISKNSSC FLYNRNHIKL STATEEEAAE 420 AYDIAAIKFR GVNAVTNFEM NRYDVEAIMK SALPVGGTAK RLKLSLESEQ KSLLSNNQQT 480 PQSSSSNNNS NSINFGAMPP VSAIPCGVPF DTTPALYHHN FFHHLYSGSA GASDTSGAAT 540 TMAAAMPLLP SAAELFIWPH QSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253659.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Swissprot | Q52QU2 | 1e-162 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A1J6IEH4 | 0.0 | A0A1J6IEH4_NICAT; Ap2-like ethylene-responsive transcription factor ail6 | ||||
STRING | XP_009615436.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-118 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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