PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00083g01812.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26034.7 Da    PI: 10.0412
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00083g01812.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.4e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ien++nrqvt+skRrng++KKA+EL vLCda++++i++sst k++ey s
  Peaxi162Scf00083g01812.1  9 KKIENSTNRQVTYSKRRNGLFKKAKELTVLCDAKICLIMLSSTRKFHEYTS 59
                              68***********************************************75 PP
2K-box83.44.9e-2871169199
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               yq++ g++ +++++e++q++l++Lk+ +++L+re+R++ Ged++ L+l+eL +L+ ++ +sl +iR++K++++++q+++ +k+ +
  Peaxi162Scf00083g01812.1  71 YQRTLGVDIWSKHYEKMQENLNRLKDINNKLRREIRQRTGEDMSGLNLQELCHLQGNISDSLAEIRERKYHVIKTQTDTCRKRVR 155
                               67788899***************************************************************************** PP

                     K-box  86 elqeenkaLrkkle 99 
                               +l+e++ +L + le
  Peaxi162Scf00083g01812.1 156 NLEEQHGSLVHDLE 169
                               ********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
CDDcd002651.50E-37280No hitNo description
SuperFamilySSF554553.66E-36295IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2082168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.80484174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKK IENSTNRQVT YSKRRNGLFK KAKELTVLCD AKICLIMLSS TRKFHEYTSP  60
NTTTKKMIDL YQRTLGVDIW SKHYEKMQEN LNRLKDINNK LRREIRQRTG EDMSGLNLQE  120
LCHLQGNISD SLAEIRERKY HVIKTQTDTC RKRVRNLEEQ HGSLVHDLEA KSEDPTYGVV  180
ENEGHFNSAM AFANGVHNLY AFRLQTLHPN LQNGGGFGSR DLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-15161161MEF2C
5f28_B8e-15161161MEF2C
5f28_C8e-15161161MEF2C
5f28_D8e-15161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2307040.0AF230704.1 Petunia x hybrida MADS box transcription factor TM6 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605879.11e-148PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-116TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLQ9LLA11e-166Q9LLA1_PETHY; MADS box transcription factor TM6
STRINGXP_009605879.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]