PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00083g01229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1549aa MW: 168519 Da PI: 6.1901 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.9e-06 | 1526 | 1549 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G Ck G++C + H+ Peaxi162Scf00083g01229.1 1526 GQRICK-FYESGRCKKGASCDYLHP 1549 5799**.8899*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.88E-8 | 78 | 132 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.8E-8 | 78 | 140 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 8.564 | 85 | 151 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 3.1E-7 | 87 | 133 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 7.71E-20 | 87 | 132 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 88 | 148 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 4.3E-4 | 337 | 419 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 2.4E-20 | 337 | 415 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 9.7E-26 | 338 | 422 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 2.2E-14 | 341 | 414 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 1.1E-32 | 475 | 588 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 14.356 | 475 | 613 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 1.57E-21 | 476 | 582 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 5.9E-18 | 481 | 574 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 2.75E-14 | 718 | 773 | IPR003169 | GYF domain |
CDD | cd00072 | 2.13E-15 | 721 | 777 | No hit | No description |
PROSITE profile | PS50829 | 14.653 | 721 | 774 | IPR003169 | GYF domain |
SMART | SM00444 | 3.2E-10 | 722 | 776 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 5.3E-15 | 723 | 774 | IPR003169 | GYF domain |
Pfam | PF02213 | 1.5E-9 | 724 | 765 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 15.3 | 1524 | 1549 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.65E-6 | 1524 | 1548 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 1528 | 1548 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1549 aa Download sequence Send to blast |
MEGTSSSSGM YNPSIQTSSV QHLNDFQLPG GPVQVAGVAP TTAAAGGVGN SVVIGEKRKR 60 GRPPRNQGAG PVKPPPMKKQ REEEEDVCFI CFDGGSLVLC DRKGCPKAYH PACIKRDEAF 120 FRSKAKWNCG WHICSVCQKA SHYLCYTCTY SLCKACTKNA DYLCVRGNKG FCSTCMRTIM 180 LIENKDQANK EMVDFDDKGS WEYLFKVYWV ILKEKLSLTL DELVQAKNPW KETDAVHGKR 240 QLMHYGHYVA NDGKGIAGQS IDHLEMKKPM ELLEQSRNDP PNTESRTIAE SNNVSTLSST 300 PQSQLTKPVE KLEFQNEDCL RTKQGSVAMH TSVNGCMTWA SKELLDFVAH MKGGDTSAIS 360 QFDVQALLLD YIKRNNLRDP RQKSQIICDM RLKSLFGKPR VGHIEMLKLL EFHFMIKEES 420 EKSAFIPAGI VGTVTGHVKP DNSDISSLMN KTKKRKTRKN GEVKIAHVNL DEYAAIDAHN 480 MNFLYLRRDL MENLAEDVEK FHDKVVGSVV RIRIPGNDQK QEIYRLVHVV GTCKSSEPYK 540 IRDKTVDVLL EVLNLDKKEA VSIDSISNQD FCENIDIEYE DFLDNPTLRE CVEKLELLKT 600 PEERQRRLLE IPEVHADPKM DPNYESESND KRKVEYPAPR CTRISRRGEK PVSSGSLVKE 660 EGSIMARVRM SEKGEACGTN ILDKLGNRLT ADQAVDRSGS EASLASVTTA NSSSGNNCET 720 DKLWHYRDPT GKIQGPFSVI QLRKWNTSGL FPLDMRIWTN HEHDDSILLT NALKGIFHKA 780 PQLHGKTSSQ SLEAAASDRK SIRWSENANG TEGQNGKKEA PGHLHNANNH SNGNTELTRM 840 NGLSPSFPQS LDSLKGNNPC SGKPQISISV PPSSQREVVL ALPHQERGHE NDNYHFVADH 900 VTSKSRGNTM SQIDDGCGHN TQSKSRQAAG QNKGSFTSNR CSNNLDSGSS FASANSYEQK 960 AKVNIPDLPS PTPETSYGEL EAEAAEKLLL LSSVIPSDIH DLPSPTPNSN REAQGEDAAE 1020 TKESVPSVLP VQESGHRWSS ASNLVIGGSQ FCEVADECGR NSPAAKPATE ELDAGHASVS 1080 SLQPAEAVGD HVATPTSNAD QLTSKPSAEE LDSGLVSASS LKLAEAVDDH VPTPTSNADQ 1140 LTSKPSAEEL DSGLVSASSL KPAEAVDDHV PIPTSNGDQL IVKPSTQEWD SGLVSISSLK 1200 PAEAVGDDVA TPASNADQLN HTSLSLPVSN FFSEPIEFST LAEESVSDLL AEVDAMESLN 1260 QNGMGSPTSA MRCGDEMISG CKDDCFSPIE ELSPTHDPVR SDALSSTGDL HLPCQSTVID 1320 ETVRASRVDA FDPLKRSSGN SSTSSEGETK SADVLFSQRV SGSNIPAPCT TRETTAYPAM 1380 EVSCSTAPAA DVFFSQRVSG SNIPAPCTTR ETTAYPAMGR STGYEGMNSG RAAAPGNMTW 1440 GGTVQGYANV GHGGSIGGAW GNSHMNRGAP FTGNPVWDSQ RRYAGERAGG PRALQGGDTG 1500 FDRGRSSWNR QQPYGGGGYS RPPPRGQRIC KFYESGRCKK GASCDYLHP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 4e-13 | 81 | 154 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 4e-13 | 81 | 154 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 4e-13 | 81 | 154 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 4e-13 | 81 | 154 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 4e-13 | 81 | 154 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 4e-13 | 81 | 154 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474357.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X3 | ||||
TrEMBL | A0A1S4ACH6 | 0.0 | A0A1S4ACH6_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X3 | ||||
STRING | XP_009600608.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2181 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |