PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00083g00087.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family BBR-BPC
Protein Properties Length: 284aa    MW: 31470.2 Da    PI: 8.2076
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00083g00087.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind310.17.3e-95128429301
                 GAGA_bind  29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksid 109
                               m+++aerda+irern+al e+k a+aerdma lqrd+alaern a+ erd++++al l++ s++      +++g ++ +gtk++ 
  Peaxi162Scf00083g00087.1   1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNSAIQERDDAIAALRLQDSSINdnnmVPDSPGNGTENGTKHVY 85 
                               899******************************************************9999888765444567888999999999 PP

                 GAGA_bind 110 slqqlse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesad.er. 186
                               + qq  +     +ed+a++  +   +++ +  +++  +ke+k++k+ + ++  k+  ++   ++  ++++++ + ++  +d e  
  Peaxi162Scf00083g00087.1  86 NQQQFADvghGSMEDPAAGYLKGTDTSEAKNPKKVRRSKESKQSKQAKIPRLSKVGAESlnmQVISTTSDDWVNLQEMDSDkEGd 170
                               8888544454889999998555554555444566666666666666666665555555432233333344443333322221322 PP

                 GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                                ++++k  +l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++
  Peaxi162Scf00083g00087.1 171 PHTSWK-DNLGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNR 254
                               455565.58**************************************************************************** PP

                 GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                               Laa+Gydls p+DLkdhWAkHGtn++ t++
  Peaxi162Scf00083g00087.1 255 LAAQGYDLSVPLDLKDHWAKHGTNRYSTLK 284
                               **************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.6E-831284IPR010409GAGA-binding transcriptional activator
SMARTSM012263.1E-971284IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNSAIQERD DAIAALRLQD  60
SSINDNNMVP DSPGNGTENG TKHVYNQQQF ADVGHGSMED PAAGYLKGTD TSEAKNPKKV  120
RRSKESKQSK QAKIPRLSKV GAESLNMQVI STTSDDWVNL QEMDSDKEGD PHTSWKDNLG  180
LNQINFDESA MPVPVCSCTG TPQPCYKWGH GGWQSACCTT TISMYPLPQI SNKRYSRVGG  240
RKMSGGAFSK LLNRLAAQGY DLSVPLDLKD HWAKHGTNRY STLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823010.0FJ982301.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560524.10.0PREDICTED: barley B recombinant-like protein D
SwissprotQ5VSA83e-84BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A1U8FXT20.0A0A1U8FXT2_CAPAN; barley B recombinant-like protein D
STRINGXP_009789611.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80622230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.25e-84basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]