PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00078g00231.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 186aa    MW: 21206.1 Da    PI: 9.1817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00078g00231.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-1954105256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               +y GVr ++ +g+++AeIrd + ng   r++lg+f+tae+Aa a+++a+++l+ge
  Peaxi162Scf00078g00231.1  54 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEDAALAYDQAALSLRGE 105
                               799******.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-2853113No hitNo description
SMARTSM003809.2E-3454118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3054113IPR001471AP2/ERF domain
PfamPF008476.9E-1354105IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2354114IPR016177DNA-binding domain
PROSITE profilePS5103221.79954112IPR001471AP2/ERF domain
PRINTSPR003671.1E-95566IPR001471AP2/ERF domain
PRINTSPR003671.1E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNNSSSCYEP SFDSQEESQK PSKKVVRSSS PENNSSKEIM NDIFFQELQE KEKHYIGVRK  60
RPWGKYAAEI RDSTRNGIRV WLGTFDTAED AALAYDQAAL SLRGEFACLN FPVERVRNLL  120
HEFDCVSHRK KGLSAVEALK EKHKKRGFHK SQGNKKKIAT RKENVLVLFD LGPKLLDELL  180
AEACIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2851113264ATERF1
3gcc_A2e-2851113264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755232e-40HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764685.11e-58PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-40ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1U7VS012e-57A0A1U7VS01_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009624600.13e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-31ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]