PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00078g00121.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 322aa    MW: 37069.3 Da    PI: 7.9921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00078g00121.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-5381371129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePwdL++k+k     ++ewyfFs++d+ky+tg+r+nrat++g+
  Peaxi162Scf00078g00121.1   8 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-EVIREVDLNKIEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATSAGF 91 
                               69****************************.99**************964444222455************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  Peaxi162Scf00078g00121.1  92 WKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                               ***********9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-606159IPR003441NAC domain
PROSITE profilePS5100558.0548159IPR003441NAC domain
PfamPF023656.0E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MASSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMEVI REVDLNKIEP WDLQEKCKIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATSAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDAD DLQGNQSDDG WVVCRVFKKK HLFKVGNEGG AASSDQVNST  180
SSHQSRAFNS QYLLQQQQGH GLNYSHIPLA LPQYNSHVQL QAQNFIPTTH HKPLDYHDFS  240
TIPTSDQHHQ SPIMVKQLMS RDCDSGLEVG SSCENQNLNE WGMIANSHQL SQQDDNDANA  300
SSMNQMNQLS LRGEMDFWNY TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-54816017166NO APICAL MERISTEM PROTEIN
1ut4_B5e-54816017166NO APICAL MERISTEM PROTEIN
1ut7_A5e-54816017166NO APICAL MERISTEM PROTEIN
1ut7_B5e-54816017166NO APICAL MERISTEM PROTEIN
3swm_A7e-54816020169NAC domain-containing protein 19
3swm_B7e-54816020169NAC domain-containing protein 19
3swm_C7e-54816020169NAC domain-containing protein 19
3swm_D7e-54816020169NAC domain-containing protein 19
3swp_A7e-54816020169NAC domain-containing protein 19
3swp_B7e-54816020169NAC domain-containing protein 19
3swp_C7e-54816020169NAC domain-containing protein 19
3swp_D7e-54816020169NAC domain-containing protein 19
4dul_A5e-54816017166NAC domain-containing protein 19
4dul_B5e-54816017166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602081.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-129BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A1S3X3A60.0A0A1S3X3A6_TOBAC; protein BEARSKIN2-like
STRINGXP_009602081.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-129NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]