PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00078g00043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 22047.9 Da PI: 4.731 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 13 | 62 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr +k +g+Wv+eIr+p gk++r++lg++ t+e+Aa+a++ a+ l+g+ Peaxi162Scf00078g00043.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGH 62 9****999.**********8...557***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.84E-22 | 12 | 70 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-32 | 12 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-35 | 12 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 13 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-21 | 13 | 71 | No hit | No description |
PRINTS | PR00367 | 1.1E-12 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEDLQESNNI QMYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK 60 GHKAQLNFPE LIDSFPKPTS SKPEDVQMAA HEAAVRFKQQ TPMPPENGGS DGCGTVVPVR 120 VGLSPSQIQA INESPMDSPK MWMELAGALL LRDPVREYTC PSYSYNDPMI LCEDIGEFEE 180 WDEMEQHHGS IWDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 11 | 74 | 4 | 68 | ATERF1 |
3gcc_A | 2e-18 | 11 | 74 | 4 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 9e-67 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257968.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
TrEMBL | A0A1J6IEM1 | 1e-103 | A0A1J6IEM1_NICAT; Ethylene-responsive transcription factor erf022 | ||||
STRING | XP_009619745.1 | 1e-103 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 5e-51 | ERF family protein |