PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00078g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 31677.4 Da PI: 8.85 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v+++G+++W++Ia++++ gR++k+c++rw++ Peaxi162Scf00078g00024.1 4 RGHWRPHEDQKLRELVEKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.6 | 7e-19 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ Peaxi162Scf00078g00024.1 56 RNPFTEEEEERLLSAHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.828 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-16 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-17 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-13 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 26.845 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-16 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 58 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.58E-11 | 58 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MCSRGHWRPH EDQKLRELVE KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRNPFT 60 EEEEERLLSA HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARKCRERSK IYAKRATAAS 120 ATTIAHQKST SDEQELSSLM QQDKRQISNE HTTRSFNPFV DAHQQYFFSE RFAYPCNLTY 180 NYSLYPKLLH KDYLFHHAKV NQDEKQRTEF YDFLQVNTDS NKSEVIDHIN ASARIMRDDE 240 EVEQEAVDLH RSKSSRGFID FLSVGDSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-34 | 4 | 105 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016445809.1 | 1e-148 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q6R0C4 | 1e-83 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A1S3Y103 | 1e-147 | A0A1S3Y103_TOBAC; myb-related protein A-like | ||||
STRING | XP_009617842.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-86 | myb domain protein 52 |
Publications ? help Back to Top | |||
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