PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00074g00347.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Dof

Protein Properties

Length: 318aa MW: 34731.2 Da PI: 7.5822

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00074g00347.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7.2e-40	39	100	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss Peaxi162Scf00074g00347.1 39 KDQAVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSSS 100 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	31	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-34	40	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDTVQWPQEI VVKPMEEIIP NTNTSSKPNC VERKARPQKD QAVNCPRCNS TNTKFCYYNN 60 YSLSQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKKSSS SSSSSPYSNV VNPLKKLPDL 120 VPPPHHDQNP SKILEGSQDL NLGFSSDFKT ISELIQVPNF DGNNNKDNNN ASISTMAPPS 180 SASSSASSSQ LSAMELINGI TSRGLNNNNN SFMSLMPISH DPSSVYSSGF SLMPSLNFSL 240 DHHGLGTDHN PYGNHLQETN TSGRFLFPFV GLKQVSSTTT TTNDGANEHD NRDHHEPVGD 300 QSTGSYWNGM LGGGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	2e-75	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485727.1	1e-141	PREDICTED: dof zinc finger protein DOF4.6-like, partial
Swissprot	Q8LAP8	6e-65	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1S4BA47	1e-140	A0A1S4BA47_TOBAC; dof zinc finger protein DOF4.6-like
STRING	XP_009766033.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-45	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]