PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00074g00078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25424.9 Da PI: 5.2152 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.5 | 1e-12 | 106 | 194 | 7 | 80 |
.-HHHHT.T-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 7 psdvlks.grlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 +sdv + +r+ +p ++++ ++ +e+s +++++d++g+ ++k++ + + ++ vl GW++ vkan+L+ Peaxi162Scf00074g00078.1 106 QSDVKSAlSRFFIPTGTCNANilnnlnseerkkleNQHSERSLEVRVMDPKGNIHKMKFTRWLSLNQLVLNHGWNKLVKANDLQK 190 66666555999*******999***9999988888755556999****************99************************ PP T-EE CS B3 77 gDfv 80 gD++ Peaxi162Scf00074g00078.1 191 GDTI 194 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 7.5E-10 | 93 | 184 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 3.7E-14 | 98 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-14 | 99 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.35E-14 | 102 | 215 | No hit | No description |
PROSITE profile | PS50863 | 9.291 | 149 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTKIRIFGKD FKSIKLFGEW VTVSLEKEQE PGLMLQEEQE PGLMLQEEQE PGLMLQEEQE 60 AGQILQEEQE EGVIQRDLPL PNNMYEAIQL AGGSEPVYIG RKKVEQSDVK SALSRFFIPT 120 GTCNANILNN LNSEERKKLE NQHSERSLEV RVMDPKGNIH KMKFTRWLSL NQLVLNHGWN 180 KLVKANDLQK GDTIDLWHFR ISSEQYPYFA INIIKNQNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |