PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00073g01731.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 485aa    MW: 55402.6 Da    PI: 7.8387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00073g01731.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-16653148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd++l+ ++k++G  +W+  ++  g+ Rt+k+c++rw +yl
  Peaxi162Scf00073g01731.1  6 KGAWSPEEDQKLKAYIKKYGIWNWSQMPKFAGLSRTGKSCRLRWMNYL 53
                              79******************99************************97 PP
2Myb_DNA-binding39.61.2e-1259104148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ +E e+ ++  ++lG++ W++Ia++++ gRt++++k++++++l
  Peaxi162Scf00073g01731.1  59 RGPFSIDEVEIVIKTYQELGNR-WSAIAARLP-GRTDNEVKNFFHTHL 104
                               89********************.*********.************986 PP
3Myb_DNA-binding40.94.6e-13304349148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE e+  +  ++ G++ W+tIa+ ++ gRt++++k++++++l
  Peaxi162Scf00073g01731.1 304 RGPFSMEEVEIVMKMYQECGNR-WSTIAANLP-GRTDNEVKNFFHTHL 349
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.912157IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-22356IPR009057Homeodomain-like
SuperFamilySSF466892.12E-284100IPR009057Homeodomain-like
SMARTSM007171.1E-13555IPR001005SANT/Myb domain
PfamPF002491.1E-13653IPR001005SANT/Myb domain
CDDcd001676.70E-11853No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2257108IPR009057Homeodomain-like
SMARTSM007172.4E-1158106IPR001005SANT/Myb domain
PROSITE profilePS5129416.26758108IPR017930Myb domain
PfamPF002493.1E-1159104IPR001005SANT/Myb domain
CDDcd001672.05E-761104No hitNo description
SMARTSM0071723221300IPR001005SANT/Myb domain
SuperFamilySSF466898.03E-21284353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-10284309IPR009057Homeodomain-like
PROSITE profilePS500904.344284298IPR017877Myb-like domain
PROSITE profilePS5129420.028299353IPR017930Myb domain
SMARTSM007173.0E-12303351IPR001005SANT/Myb domain
PfamPF002494.2E-11304349IPR001005SANT/Myb domain
CDDcd001674.55E-8306349No hitNo description
Gene3DG3DSA:1.10.10.603.4E-18310353IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDEIKKGAWS PEEDQKLKAY IKKYGIWNWS QMPKFAGLSR TGKSCRLRWM NYLSPDVKRG  60
PFSIDEVEIV IKTYQELGNR WSAIAARLPG RTDNEVKNFF HTHLKKHMSL KNDHALMKKK  120
ARSKRVMKKT RENEKTNTGK AQERPAVEVV PTKIPMIGSS SNKNSPSPNS SSSQCNSIIT  180
CQENPTDQDC YNNIISSSRV DQPVIMNMES PFILESNPET SESSLGDTNC NQLIHQFDQY  240
PHDSCNTISD GSSFFDSFDQ FDMIISLFLT SLLNFNLVMV AGLSRTGKSC RLRWVNYLRP  300
DIKRGPFSME EVEIVMKMYQ ECGNRWSTIA ANLPGRTDNE VKNFFHTHLK MHLGVKNDVT  360
VKTKGRSKRV KKTNKNEKKL ADNAQERSAD VASPCSSVVI CEENHMMDVM DFSKTYQDCY  420
NVSSLVDQSV INMENTVILE SNPETSETID AANCQLHQFD YSHLCSSLFD DHRFNSLDMN  480
SFWSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2333504106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244663.12e-96PREDICTED: transcription factor WER-like
TrEMBLA0A1J6JBL15e-95A0A1J6JBL1_NICAT; Myb-related protein myb4
STRINGXP_009594710.12e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-44MYB-like 102