PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00073g01424.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 267aa MW: 30382.9 Da PI: 10.7073

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00073g01424.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.5e-19	75	125	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr++ +g+Wv+eIr+p kr++lg+f taeeAa+a+++a+ ++g Peaxi162Scf00073g01424.1 75 KKFKGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEEAARAYDEAAILMNG 125 59***999.******8.....335********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.43E-33	75	135	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.8E-31	76	133	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.417	76	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-20	76	134	IPR016177	DNA-binding domain
Pfam	PF00847	5.6E-12	76	125	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-38	76	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-10	77	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-10	99	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MRVFIVIKVR SSVKFEKDGE WKKKKKSFSF FQIKPDLRVG KSFVLRIAFS FTQPAVMEIK 60 VQSIDEQRTN MVQSKKFKGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDEAA 120 ILMNGQVAKT NFPIVKENPV NNSGINNEKK FPLSSSSMLS TVLNAKLRKC CKDNPAPSMT 180 CLRLDNDNCH IGVWQKRSGK QSGSNWLTKI ELGKKEETHQ SHESMNSWSV SSTSGSSSSS 240 SSSGISDLGV RSKIGQFHFY YFHKFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-16	72	133	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260506.1	5e-98	PREDICTED: ethylene-responsive transcription factor SHINE 3-like
Refseq	XP_019260507.1	5e-98	PREDICTED: ethylene-responsive transcription factor SHINE 3-like
Swissprot	Q3E958	9e-65	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A314LDG8	1e-96	A0A314LDG8_NICAT; Ethylene-responsive transcription factor shine 3
STRING	XP_009758054.1	6e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1352	24	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	2e-56	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]