PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00073g00110.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 688aa    MW: 77683.2 Da    PI: 5.644
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00073g00110.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.16.6e-1103096812374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfs 85 
                               + lL++cA+a++s d++ a++lL r+++++sp+gd ++Rl +y+++AL+arl++ +++ +y a+++s+ s    ++ l+a+k++ 
  Peaxi162Scf00073g00110.1 309 RGLLTQCAQALASYDTRTANELLMRIRQHSSPHGDGTERLGHYLANALEARLSGlTGTACYTAFASSRIS---AARILKAYKMLI 390
                               679***************************************************8999999999998888...99********** PP

                      GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                +sP+   s++ aN+ I + v g   r+HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++e tg+rL+k
  Peaxi162Scf00073g00110.1 391 TASPFKLTSNIFANKYIRKLVIGGaPRIHIIDFGILYGFQWPCLIQGLSLRPGGPPELRITGIELPQPGfrPAERVEDTGRRLEK 475
                               *******************986655*******************************************9**************** PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                               ++++++vpf f++ +ak++e++++eeL+++++E+l+Vn+ ++l +++de+v  +s+rd+vL+l+++++P+++++   +  +n++ 
  Peaxi162Scf00073g00110.1 476 YCKRFNVPFVFKA-IAKKWESITVEELEIDRDEVLVVNSLYRLGNIPDETVVPDSPRDAVLDLIRRIRPDLFIHGVLNGTYNTPF 559
                               *************.7********************************************************************** PP

                      GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               F++rf eal ++s+lfd++ea+l+re+e+r+  E+e+++r+++nv+aceg+er+er et+++W++r ++aGF+++pl+++++k +
  Peaxi162Scf00073g00110.1 560 FVTRFREALFHFSSLFDMFEATLSRENEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQNRCTRAGFRQLPLDQEIVKLV 644
                               ************************************************************************************* PP

                      GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +  +r  + + ++v+e+ +++++gWk+r ++++S+W+
  Peaxi162Scf00073g00110.1 645 SNKVRSDYHKDFSVDEDGHWMLQGWKGRVMYALSCWK 681
                               ******99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.188282661IPR005202Transcription factor GRAS
PfamPF035142.3E-107309681IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
METALVQAQD SFIFRHLSFP LLDPRKDLVQ NGSSTTLFNR PSFEEYPVLS NVSGDSGGSG  60
KPQEEEEKDH SDAMLKYITQ MLMEEDDLEK KPCMYHDCMA VQAAEKYFSN VLNGSEENNL  120
IMDSSSSHLT SSSSDSIDES SPGFESPESL LQSLKSLSDG VSNGLQLDPH YDDSFLTSFH  180
YSFGNDQLDQ EGGEAANLFQ SESNHSPSGS REKKNHHRED DDDAAAADPR RSNKQLAATF  240
ADESEPLEMY DEVLLCLNNP YVEHNITTTT TTTVISGCSP DEAKKTTKGR PRGGRKHGNN  300
KKKDMVDLRG LLTQCAQALA SYDTRTANEL LMRIRQHSSP HGDGTERLGH YLANALEARL  360
SGLTGTACYT AFASSRISAA RILKAYKMLI TASPFKLTSN IFANKYIRKL VIGGAPRIHI  420
IDFGILYGFQ WPCLIQGLSL RPGGPPELRI TGIELPQPGF RPAERVEDTG RRLEKYCKRF  480
NVPFVFKAIA KKWESITVEE LEIDRDEVLV VNSLYRLGNI PDETVVPDSP RDAVLDLIRR  540
IRPDLFIHGV LNGTYNTPFF VTRFREALFH FSSLFDMFEA TLSRENEDRK LFEEEVFARD  600
AMNVIACEGT ERVERPETYK QWQNRCTRAG FRQLPLDQEI VKLVSNKVRS DYHKDFSVDE  660
DGHWMLQGWK GRVMYALSCW KPTRLRSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4031468225380Protein SCARECROW
5b3h_A1e-4031468224379Protein SCARECROW
5b3h_D1e-4031468224379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4499400.0DQ449940.1 Nicotiana tabacum GRAS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538732.10.0PREDICTED: scarecrow-like protein 14 isoform X1
TrEMBLA0A2G3AXQ40.0A0A2G3AXQ4_CAPCH; Uncharacterized protein
STRINGSolyc01g100200.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-169GRAS family protein