PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00071g01045.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 424aa    MW: 47081.9 Da    PI: 9.8601
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00071g01045.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18.1e-12108147548
                       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                               GVr+ k rgr+ A+Irdp    ++ +r++lg+f+t eeA +a+  
  Peaxi162Scf00071g01045.1 108 GVRRQK-RGRFTARIRDP----IShTRVWLGTFDTVEEASEAYFS 147
                               9**888.8*********8....247*****************965 PP
2AP235.42.7e-11205251151
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                               +++ GVr +k +gr+++eI+ p    ++ kr++lg+f +aeeA +a+   ++
  Peaxi162Scf00071g01045.1 205 THFVGVRKRK-SGRFFSEIKNP----ISkKRIYLGTFNSAEEASQAYQTKKL 251
                               5799***999.7******9997....246*****************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.749105164IPR001471AP2/ERF domain
SMARTSM003801.6E-5107151IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-10108149IPR016177DNA-binding domain
PfamPF008471.0E-5108150IPR001471AP2/ERF domain
CDDcd000181.98E-14108145No hitNo description
Gene3DG3DSA:3.30.730.103.2E-13108145IPR001471AP2/ERF domain
CDDcd000181.53E-14205246No hitNo description
SuperFamilySSF541711.57E-11206254IPR016177DNA-binding domain
PfamPF008471.1E-5206246IPR001471AP2/ERF domain
PROSITE profilePS5103214.868206266IPR001471AP2/ERF domain
SMARTSM003804.3E-10206272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-15206255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTDERTRAIE KLIKDPFTKR RIRLGIFNTA EEASNAYLLR KKVFLATPPS VNKRFNSNMD  60
FTTGKEPFIS VKSSCSMANV HGTESSSGCI STTVTSNPKA KRNLLGLGVR RQKRGRFTAR  120
IRDPISHTRV WLGTFDTVEE ASEAYFSKKS EFDKLSKGIK ENKPKHSDQI QPESPVGASL  180
SVDIDHTLNV TSVGVNKTIS SHETTHFVGV RKRKSGRFFS EIKNPISKKR IYLGTFNSAE  240
EASQAYQTKK LEFQKLAKAK QQCNLKTHSS ARAKQDGKEK LVDANQGHQT VNHEGFQLES  300
GCGALSLETD APMSNSSDGG CDQRIGSHEI SHSMGVQKRK LGKQTSEILS ETLGTVEEAF  360
NAYQCKKSSF QISKKAELQT DKPTDSSAGE NQVGEEDEDL WKGQWVQLPV SSIQVQVDEK  420
LQEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771233.11e-129PREDICTED: uncharacterized protein LOC104221795
TrEMBLA0A1U7VXX51e-127A0A1U7VXX5_NICSY; uncharacterized protein LOC104221795
STRINGXP_009771233.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-15ERF family protein