PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00071g00102.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 527aa    MW: 58871.2 Da    PI: 8.3848
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00071g00102.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.72.5e-0783120949
                       AP2   9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                               ++k++r++A I dp     + k ++lg+f+t ee  +a+   
  Peaxi162Scf00071g00102.1  83 RRKNKRYAAVITDPI----SnKEVWLGTFDTVEEVSEAYLSK 120
                               4559*********73....24*************99999765 PP
2AP229.12.5e-09175215145
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 
                               +++ GVr +  +gr+ +eI+d++    +k  +lg+f+taeeA +a
  Peaxi162Scf00071g00102.1 175 THFVGVRKRN-SGRYTSEIYDCT---SKKMLYLGTFDTAEEASQA 215
                               5799***888.8*********42...25**************998 PP
3AP230.96.6e-10285328249
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                               ++ GV+  k +g++v+eIr p    ++ +r++lg+f taeeA + +   
  Peaxi162Scf00071g00102.1 285 HIVGVSKIK-SGKYVSEIRNP----ISkTRIWLGTFVTAEEASQVYQSK 328
                               789***999.7*********7....246**************9988655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.25774136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-781117IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-683121IPR016177DNA-binding domain
CDDcd000186.96E-13175216No hitNo description
SuperFamilySSF541711.77E-9176223IPR016177DNA-binding domain
SMARTSM003804.9E-6176230IPR001471AP2/ERF domain
PROSITE profilePS5103211.943176236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-12176224IPR001471AP2/ERF domain
CDDcd000182.10E-12284325No hitNo description
PROSITE profilePS5103212.971285344IPR001471AP2/ERF domain
SMARTSM003802.9E-7285339IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-10286333IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-13288333IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MQVCMDTLEY SVKEASRGFN SNMDEYKKLI KVNQGKEPII CVQSPEEASL LMSKVHDTKS  60
SDVCISTVTS NLNAKRNLLR IERRKNKRYA AVITDPISNK EVWLGTFDTV EEVSEAYLSK  120
KSEFDKLSKG NMENKPKKCD QIQPESPIGA SLSVDQTSSV ASVGSKQTID SHNTTHFVGV  180
RKRNSGRYTS EIYDCTSKKM LYLGTFDTAE EASQAFQSKK LEIQKLVKAK QQCNRHTHSS  240
ARAEQDGQEK LIKICGASLS VDNDQTIDVA SVGKNETTNS HKTTHIVGVS KIKSGKYVSE  300
IRNPISKTRI WLGTFVTAEE ASQVYQSKKL EFQKLVKAKQ QNSKTLSCAR EKKDEKEKLV  360
HVKQGHETVD REGFHLESAC GASSSEINVT MSDSSNGGRD QMINSHKISH SMGVQKRKWG  420
EYTSEILLGT LGTDEEAFSP YQCKKFGFQR SKKAELQSDM PTDSSAGENQ EGEEDEDLWK  480
GQWVQLPGDN KEVKISLKLG VPVIDNYGSL LGEFSSLDDL RIFKHRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-31HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-31HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771233.11e-164PREDICTED: uncharacterized protein LOC104221795
TrEMBLA0A1U7VXX51e-163A0A1U7VXX5_NICSY; uncharacterized protein LOC104221795
STRINGXP_009771233.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-13ERF family protein