PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00071g00098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 53510.7 Da PI: 6.3652 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 412.4 | 4.1e-126 | 46 | 468 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv+lL++c+++v++g+ e a+ r+ +la+pdgd+mqR+aayfteALa r+++ +++l +al++++ + +ee ++klf+ Peaxi162Scf00071g00098.1 46 LVHLLVTCVNHVATGNIESANIGFDRIAHLAAPDGDSMQRIAAYFTEALADRMLKGWPGLHRALNSTKLA--CLAEESLVQKLFF 128 68**************************************************************999998..599999******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e++P+l+++++++N+aI+ea+ege+ vHiiD++ +++QW++Llq++++Rpegpp+lRiTg+++ +k+ le+++++L++ Ae Peaxi162Scf00071g00098.1 129 ELCPFLRLAYVITNEAIMEAMEGEKVVHIIDLNSFEPAQWINLLQSMSARPEGPPHLRITGIHE----HKHVLEQMAHQLNEEAE 209 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214 +l++pf+fn+ ++++le+le+ +L+vk+gEalaV++vlqlh ll Peaxi162Scf00071g00098.1 210 KLDIPFQFNP-IVSKLENLEIGSLNVKTGEALAVSSVLQLHCLLafddemlqkntplvskstnsvhlqrmlqvsprtlgdflekd 293 **********.7999********************************************************************** PP GRAS 215 ...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +s+ ++ + ++L+ +++lsPk+++++eqe++hn+ ++er +eal++y+alfd+le+ +r+s er+k Peaxi162Scf00071g00098.1 294 vpnsygaspdsslasPQSLVTAPKMMNFLNGLWNLSPKIMIMTEQESNHNGLCLMERTMEALNFYAALFDCLESREARTSIERQK 378 *********999976333334446999************************************************9********* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 +E++l g+ei+n+++ceg er+ rhe+lekW rle aGF+ v+l+ +++ q +llr ++ dg+++++++g+++++W+d+pL+s Peaxi162Scf00071g00098.1 379 IEKMLYGEEIKNILSCEGLERKRRHEKLEKWIPRLEFAGFGRVRLNFHIMLQGMRLLRSHNYDGFKIKDQDGCFLICWQDQPLFS 463 ************************************************************************************* PP GRAS 370 vSaWr 374 vSaWr Peaxi162Scf00071g00098.1 464 VSAWR 468 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.734 | 20 | 448 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-123 | 46 | 468 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MGQEEGSSSV SSSPLQFFSM MSLSPGIGSP HPWLGEMRSE QRGLCLVHLL VTCVNHVATG 60 NIESANIGFD RIAHLAAPDG DSMQRIAAYF TEALADRMLK GWPGLHRALN STKLACLAEE 120 SLVQKLFFEL CPFLRLAYVI TNEAIMEAME GEKVVHIIDL NSFEPAQWIN LLQSMSARPE 180 GPPHLRITGI HEHKHVLEQM AHQLNEEAEK LDIPFQFNPI VSKLENLEIG SLNVKTGEAL 240 AVSSVLQLHC LLAFDDEMLQ KNTPLVSKST NSVHLQRMLQ VSPRTLGDFL EKDVPNSYGA 300 SPDSSLASPQ SLVTAPKMMN FLNGLWNLSP KIMIMTEQES NHNGLCLMER TMEALNFYAA 360 LFDCLESREA RTSIERQKIE KMLYGEEIKN ILSCEGLERK RRHEKLEKWI PRLEFAGFGR 420 VRLNFHIMLQ GMRLLRSHNY DGFKIKDQDG CFLICWQDQP LFSVSAWRIQ RYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-36 | 46 | 468 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185670.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_019185679.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_019185686.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A438GU36 | 0.0 | A0A438GU36_VITVI; Scarecrow-like protein 3 | ||||
TrEMBL | F6GX84 | 0.0 | F6GX84_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g01220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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