PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00070g00045.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 579aa    MW: 66196.3 Da    PI: 6.1316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00070g00045.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11317359754
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A++Y+ +L
  Peaxi162Scf00070g00045.1 317 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIDYVMEL 359
                               68*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-186153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.688310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-12312364No hitNo description
SuperFamilySSF474594.97E-16313373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-15316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-16317373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9317360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MELMHLMERL RPIVGLKGWD YCVLWKFSED QRFLEWMCCC CGGAEQSMHS CEQELLYPDS  60
STSPCRDVMF QHPRTTACDL LAQMPPSLLL DSGIYAQTVF SDQAKWMNFV PFSETSVSNE  120
TIGTRVLVPS PLGLLELFSA KHLPEDEKVI NFVLAQCCNI NLEQQAMINS GAMNSNGNEH  180
KDNVYQQIVS PVTSRDHSDH LSYDHFPLKR KHVDTSSMNF LPQFSTYSTP EIENNNTGNM  240
LFDSTSDMTH FSNSMENSRY REMDAYLQKQ VGNIDDESVK HDHNGRSNSG SDSDQNEEED  300
DPKYRRRNGK GQSKNLVAER KRRKKLNERL YALRALVPKI SKLDRASILG DAIDYVMELE  360
KQVKDLQLEL EEHSDNEGTG RNQNQNQIQP EALSHNGTDN RPKSQNGKLL NGNHREVSTN  420
SNGSIFPSRQ NQESEESDKL QQMEPQVEVA QLDGNEFFVK VFREHKSGGF VRILEALNSL  480
GLEVTNVNAT RHTCLVSSIF KVEKRDSEMV QADHVRDSLL ELTRNPSRGW SHEMARANSE  540
NGNGSATDYL HNHQHQHHHD NENNHHKHSN SLHFHQLHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304324RRRNGKGQSKNLVAERKRRKK
2318325ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-65HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018630711.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A314KTZ90.0A0A314KTZ9_NICAT; Transcription factor aborted microspores
STRINGXP_009616536.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-138bHLH family protein