PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00068g00224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 25361.2 Da PI: 7.6735 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 92 | 133 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ Peaxi162Scf00068g00224.1 92 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 133 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.544 | 74 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-5 | 91 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-6 | 91 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-8 | 92 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-7 | 94 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
RSSFLVPLPK FSENGHVAEN RFLNSKPTSV HPMPSTDIDE PKDRTAIKST PGPSNSPAFG 60 SLVEQNTQQF PEIKRRKRHR RKHFENQEPC LMRGVYFKNM KWQAAIKVDK KQIHLGTVGT 120 QEEAARLYDR AAFMCGREPN FELSEEEKQE LRQFKWDEFL TFTRSAITNK KTRRRTGAGT 180 RRKSEPTSTV NSEEEDEEEG GEPEGNGFSA SEDTEHDIML S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254066 | 8e-80 | AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence. | |||
GenBank | HG975448 | 8e-80 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 8e-80 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016461280.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A1S3Z9Z8 | 1e-120 | A0A1S3Z9Z8_TOBAC; ethylene-responsive transcription factor-like protein At4g13040 | ||||
STRING | XP_009758059.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6246 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 8e-47 | ERF family protein |