PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00067g01614.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 490aa    MW: 54379.7 Da    PI: 8.8303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00067g01614.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0587109123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peaxi162Scf00067g01614.1  87 FVCEICNKGFQRDQNLQLHRRGH 109
                               89*******************88 PP
2zf-C2H215.74.4e-05163185123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H++t+
  Peaxi162Scf00067g01614.1 163 WKCDKCSKKYAVQSDWKAHQKTC 185
                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.53E-886109No hitNo description
PROSITE profilePS5015710.94987109IPR007087Zinc finger, C2H2
PfamPF121717.8E-587109IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM0035598128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.53E-8158184No hitNo description
SMARTSM0035594163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSNISGEEGS FSSGNTGEEV QQLHHQAPHF HTSNNNTITT SNGSSSLSQQ QQNKHQPKKK  60
RNLPGTPDPN AEVIALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT  120
TEVRKRVYIC PEPTCVHHNP ARALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA  180
HQKTCGTREY KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQGLMNNMD PNLQGGQMHE  240
LMSSNASLGL SEFNNFDPKN PLKSLPQELL PIPFNFNYLQ DGSKNGPAQG QGQLSGSSVP  300
MSATALLQKA AQMGATASSS INSPMMQKSF VTSAMAGHDI IARPTPYVGP SPYENFQTQP  360
DNNNHQPNLA AVMSDMGMYS GILLSNDQNN GGFINNITEH NHEKNSNSVM GRNQKVLGQS  420
GNDDMLTVDF LGVGGSSRPQ NLHEQQQQQR LEAAINQQRM QAAAINNPFH HQQNMTSHGN  480
SPLEKPMWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35159228372Zinc finger protein JACKDAW
5b3h_F8e-35159228372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-111HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565721.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A2G3CTP90.0A0A2G3CTP9_CAPCH; Zinc finger protein MAGPIE
STRINGXP_009620710.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.12e-99C2H2-like zinc finger protein