PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00066g02121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 174aa MW: 19952.4 Da PI: 9.1503 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.7 | 3.5e-27 | 48 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks+++++i+ ++fvCskeg+r++++ k ++r++ tr gCk l v+k++d+kw v +l+++H Peaxi162Scf00066g02121.1 48 NFYLDYAHRNGFSVRRGRVTKSRKDKSIIGQEFVCSKEGFRSKKNLK---SNRPQDITREGCKVLLYVSKKEDAKWAVCRLVSNH 129 6*****************************************98877...999******************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00066g02121.1 130 NHELA 134 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-24 | 48 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MENSNIDEQN EIGSDMDGTT PFVPSSGVEN HKDLYIGMEF SSLDDSFNFY LDYAHRNGFS 60 VRRGRVTKSR KDKSIIGQEF VCSKEGFRSK KNLKSNRPQD ITREGCKVLL YVSKKEDAKW 120 AVCRLVSNHN HELATPNSQK FLRSKRKKSE AQKNLIDLLD DSGVRPDHLL PHNF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015167012.1 | 1e-79 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A3Q7EE03 | 2e-71 | A0A3Q7EE03_SOLLC; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-26 | FAR1-related sequence 5 |