PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00066g00191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 565aa MW: 63009.8 Da PI: 4.8279 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 446.4 | 1.9e-136 | 197 | 565 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + L++cA a+++g+le+a++++++l++++s +gdp++R aay++eALaarla s+++lykal+++e++ ss +l+a++++ ev Peaxi162Scf00066g00191.1 197 QMLFSCAAAIQDGNLEQASSMINELRQMVSIQGDPLERTAAYMVEALAARLATSGKGLYKALKCKEAP---SSARLSAMQVLLEV 278 79*****************************************************************9...9************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 +P+++f++++aN aIlea++ e+rvHiiDfd++qG Q+ +L+q+Las p++p++l++Tgv++pes+ l+ +g rL+++A+ Peaxi162Scf00066g00191.1 279 CPYFRFGFMAANGAILEAFKDERRVHIIDFDVNQGSQYYTLMQTLASMPGKPAHLKLTGVDDPESVqrAIGGLNVIGLRLEELAK 363 ****************************************************************99777789************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 l+++fef++ v+++++ +++ +L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+ Peaxi162Scf00066g00191.1 364 DLKLSFEFQA-VSSNTALVTPAMLNCRPGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTAPFLQ 447 **********.7************************************************************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 r++e +yysa+f+sl+a+l+r+s+er++vEr++l+r+i n+vaceg+er+er e ++kWr+r+++aGF+p p+s ++++++++l Peaxi162Scf00066g00191.1 448 RVAEVYNYYSAVFESLDATLSRDSQERVNVERQCLARDIINIVACEGEERIERYEVAGKWRARMMMAGFTPCPISRNVYDSIRSL 532 ************************************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++++ y+ ee g+l +gW+d++Lv++SaW+ Peaxi162Scf00066g00191.1 533 IKQYSER-YKAEEAAGALHFGWEDKTLVVASAWK 565 *****66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.201 | 169 | 546 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-134 | 197 | 565 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MSLVRSARSF GNGKLYFPNG HNENSGLSTS MFTKNARGNL YATESSSTDS YDAKYLLEFP 60 SPSEELLNTS PSGVLENPFH QRHSPSFQPS REYNVCHVSY DSEDFVNQSP DSLEYSDGRV 120 TLKLQELERV LFDDNDADGD DEFSHGQSMD VDGEWVNQIR TMLLQDSPKE STSSDSNISS 180 SCSNKEISVT APQTPKQMLF SCAAAIQDGN LEQASSMINE LRQMVSIQGD PLERTAAYMV 240 EALAARLATS GKGLYKALKC KEAPSSARLS AMQVLLEVCP YFRFGFMAAN GAILEAFKDE 300 RRVHIIDFDV NQGSQYYTLM QTLASMPGKP AHLKLTGVDD PESVQRAIGG LNVIGLRLEE 360 LAKDLKLSFE FQAVSSNTAL VTPAMLNCRP GEALIVNFAF QLHHMPDESV STVNQRDQLL 420 RMVKSLNPKL VTVVEQDMNT NTAPFLQRVA EVYNYYSAVF ESLDATLSRD SQERVNVERQ 480 CLARDIINIV ACEGEERIER YEVAGKWRAR MMMAGFTPCP ISRNVYDSIR SLIKQYSERY 540 KAEEAAGALH FGWEDKTLVV ASAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-63 | 202 | 564 | 26 | 378 | Protein SCARECROW |
5b3h_A | 8e-63 | 202 | 564 | 25 | 377 | Protein SCARECROW |
5b3h_D | 8e-63 | 202 | 564 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628410.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_009628411.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_009628412.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_009628414.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501226.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501227.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501228.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501230.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501231.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_016501232.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_018633977.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_018633978.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_018633979.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A1S4CJ40 | 0.0 | A0A1S4CJ40_TOBAC; scarecrow-like protein 1 | ||||
STRING | XP_009628410.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8967 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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