PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00065g01127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28672.1 Da PI: 6.0472 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.8e-14 | 97 | 144 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f eL llP + kK++Ka+iLe+A++++k+Lq Peaxi162Scf00065g01127.1 97 QEHIIAERKRREKLSQRFVELSALLPGL-----KKVDKASILEQAIKCVKELQ 144 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-11 | 97 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-17 | 98 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-16 | 98 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.16E-13 | 99 | 148 | No hit | No description |
SMART | SM00353 | 3.6E-13 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MCWCNLQGEG AYYSNENKSL DDFTTQKSTT SEDQETTELS LYPPNTRHAS GSYFNQESKS 60 KSCENHQHKM NNNINVNSDP SDQGCKIEPS KSFNGHQEHI IAERKRREKL SQRFVELSAL 120 LPGLKKVDKA SILEQAIKCV KELQEKVQLL EEQKNTSRSI MFVNKSQLEE EDDNYSSSDE 180 IKSHGSIITD DLPLDIEARF SDKNVLIAIT CARRTGFLLK IYDEIEKLHL TIVNSSMMPF 240 GKHANHVTIV AQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 107 | ERKRRE |
2 | 103 | 108 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791053.1 | 4e-81 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_016480480.1 | 4e-81 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 1e-41 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1S4AV82 | 1e-79 | A0A1S4AV82_TOBAC; transcription factor bHLH18-like | ||||
TrEMBL | A0A1U7XJJ5 | 1e-79 | A0A1U7XJJ5_NICSY; transcription factor bHLH18-like | ||||
STRING | XP_009791053.1 | 2e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13602 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-32 | bHLH family protein |