PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00065g00327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GATA | ||||||||
Protein Properties | Length: 126aa MW: 13610.3 Da PI: 10.862 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 23.2 | 9.4e-08 | 19 | 37 | 17 | 35 |
GATA 17 dgnktLCnaCGlyyrkkgl 35 ++++LCnaCG++ rkk++ Peaxi162Scf00065g00327.1 19 TQERSLCNACGIRSRKKRR 37 56789***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 4.2E-4 | 20 | 37 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MMDLSDKGSG SEDMSSQTTQ ERSLCNACGI RSRKKRRALL GLNKEDKKTK KSGNKNSSSN 60 SSTSSSGDST SSNNNGSSLK KKLLFPFGSQ VVLQRPRSSN NHRRKLGEVE QAAFLLMALS 120 CGSVYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572171.1 | 1e-38 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 2e-19 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2G3CIE3 | 2e-37 | A0A2G3CIE3_CAPCH; GATA transcription factor 23 | ||||
STRING | XP_009795635.1 | 4e-34 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-12 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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