PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00065g00120.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

CAMTA

Protein Properties

Length: 910aa MW: 102889 Da PI: 8.5353

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00065g00120.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.8	2.6e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 +e k rwl+++ei+aiL n + +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYa Peaxi162Scf00065g00120.1 30 EEaKMRWLRPNEIHAILCNNKYFNIFVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNDERIHVYYA 114 45599****************************************************************************** PP CG-1 87 hseenptfqrrcywlLeeelekivlvhylevk 118 h+e++ptf rrcywlL+++le+ivlvhy+e++ Peaxi162Scf00065g00120.1 115 HGEDHPTFVRRCYWLLDKTLEHIVLVHYRETQ 146 ***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.264	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.3E-74	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.7E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.04E-10	378	465	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	9.79E-16	563	677	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.28E-14	563	673	No hit	No description
Pfam	PF12796	3.1E-6	564	643	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.6E-15	564	676	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.743	581	685	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.594	614	646	IPR002110	Ankyrin repeat
SMART	SM00248	6.4E-6	614	643	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.181	761	787	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	18	776	798	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	777	806	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0026	799	821	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.688	800	824	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.8E-4	801	821	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	878	900	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.517	880	908	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MESSRPGLLA GAEIHGFRTL QDLDIPSIME EAKMRWLRPN EIHAILCNNK YFNIFVKPVN 60 LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDHP 120 TFVRRCYWLL DKTLEHIVLV HYRETQETQG SPATSVAKVS PATPVNSNSS SDPSDPSSWV 180 LSEECNSVDE RAYGASQHAQ LEPNRDVTVK NHEQRLLEIN TLEWDELLAP GDPNKLIATQ 240 EGGGRASVGQ QNQCEVNGYS LNDGSYSVSR VPIASLENYV GQVAGSETVN INPSNGMSFR 300 SGDGLMTSNF QNIEPRVMPV GAGDSFDSLN KDGLQTQDSF GRWMNYFISD SPGSADELMT 360 PESSVTIDQS YVMQQTFNIT EIAPGWALSS EETKILVIGH FPGGQSQLAR SNLLCVCANV 420 CFPAEFVQPG VYRCVISPQS PGLVNLFLSF NGNTPISQVM TFEFRAPSAR KWTASPEDQS 480 NWDEFRVQMR LAHLLFSTSK SLSIFSSKVQ QDSLRDAKRF VRKCAHIRDT WSYLIKSIED 540 KKLPIPHAKD CLFELSLQTK FHEWLLERVV EGCKKLERDD QGQGVIHLCA ILGYTWAVYP 600 FSWSGLSLDY RDKGGWTALH WAAYYGREKM VATLLSAGAK PNLVTDPTSE NPGGSTAADL 660 ASKNGFEGLG AYLAEKALVE HFKDMTLAGN VSGSLQTTTE PINPANFTDE ELYLKDTLAA 720 YRNAADAAAR IQAAFREHSF KVRTKVVESL NPEMEARNIV AAMKIQHAFR NYESRKKLAA 780 AARIQYRFRT WKMRKDFLNM RRQAIKIQAV FRGFQVRRQY RKICWSVGVL EKAVLRWRLK 840 RKGFRGLQVQ SSPTVDIRPD SDMEEDFFRA SRKQAEERVE RSVVRVQAMF RSKQAQEEYR 900 RMKLEYNSAT

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MESSRPGLLA GAEIHGFRTL QDLDIPSIME EAKMRWLRPN EIHAILCNNK YFNIFVKPVN  60
LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDHP  120
TFVRRCYWLL DKTLEHIVLV HYRETQETQG SPATSVAKVS PATPVNSNSS SDPSDPSSWV  180
LSEECNSVDE RAYGASQHAQ LEPNRDVTVK NHEQRLLEIN TLEWDELLAP GDPNKLIATQ  240
EGGGRASVGQ QNQCEVNGYS LNDGSYSVSR VPIASLENYV GQVAGSETVN INPSNGMSFR  300
SGDGLMTSNF QNIEPRVMPV GAGDSFDSLN KDGLQTQDSF GRWMNYFISD SPGSADELMT  360
PESSVTIDQS YVMQQTFNIT EIAPGWALSS EETKILVIGH FPGGQSQLAR SNLLCVCANV  420
CFPAEFVQPG VYRCVISPQS PGLVNLFLSF NGNTPISQVM TFEFRAPSAR KWTASPEDQS  480
NWDEFRVQMR LAHLLFSTSK SLSIFSSKVQ QDSLRDAKRF VRKCAHIRDT WSYLIKSIED  540
KKLPIPHAKD CLFELSLQTK FHEWLLERVV EGCKKLERDD QGQGVIHLCA ILGYTWAVYP  600
FSWSGLSLDY RDKGGWTALH WAAYYGREKM VATLLSAGAK PNLVTDPTSE NPGGSTAADL  660
ASKNGFEGLG AYLAEKALVE HFKDMTLAGN VSGSLQTTTE PINPANFTDE ELYLKDTLAA  720
YRNAADAAAR IQAAFREHSF KVRTKVVESL NPEMEARNIV AAMKIQHAFR NYESRKKLAA  780
AARIQYRFRT WKMRKDFLNM RRQAIKIQAV FRGFQVRRQY RKICWSVGVL EKAVLRWRLK  840
RKGFRGLQVQ SSPTVDIRPD SDMEEDFFRA SRKQAEERVE RSVVRVQAMF RSKQAQEEYR  900
RMKLEYNSAT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566049	0.0	JN566049.1 Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018628583.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1J6KBX9	0.0	A0A1J6KBX9_NICAT; Calmodulin-binding transcription activator 5
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]